Protein–RNA interactions for Protein: Q06406

LSM6, U6 snRNA-associated Sm-like protein LSm6, yeast

Known RBP Predictions only

Length 86 aa.

Protein		RNA				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	UniProt Accession	Gene	Ensembl Transcript ID	Length	Transcript Status	Prediction Score	Prediction z-Score	Detected Interaction
LSM6	Q06406	PET111	YMR257C	2403 nt		-0.06	□□□□□ -2.42
LSM6	Q06406	NOP9	YJL010C	2001 nt		-0.07	□□□□□ -2.42
LSM6	Q06406	YDL152W	YDL152W	366 nt		-0.07	□□□□□ -2.42
LSM6	Q06406	YDR182W-A	YDR182W-A	204 nt		-0.07	□□□□□ -2.42
LSM6	Q06406	RSM27	YGR215W	333 nt		-0.07	□□□□□ -2.42
LSM6	Q06406	snR44	snR44	211 nt		-0.07	□□□□□ -2.42
LSM6	Q06406	RMD6	YEL072W	696 nt		-0.08	□□□□□ -2.42
LSM6	Q06406	YER038W-A	YER038W-A	381 nt		-0.08	□□□□□ -2.42
LSM6	Q06406	RRT1	YBL048W	312 nt		-0.08	□□□□□ -2.42
LSM6	Q06406	SUS1	YBR111W-A	291 nt		-0.08	□□□□□ -2.42
LSM6	Q06406	YJR003C	YJR003C	1560 nt		-0.09	□□□□□ -2.42
LSM6	Q06406	RPL9A	YGL147C	576 nt		-0.09	□□□□□ -2.42
LSM6	Q06406	YOR053W	YOR053W	342 nt		-0.09	□□□□□ -2.42
LSM6	Q06406	PRP5	YBR237W	2550 nt		-0.09	□□□□□ -2.42
LSM6	Q06406	SPO23	YBR250W	1572 nt		-0.1	□□□□□ -2.42
LSM6	Q06406	snR79	snR79	84 nt		-0.1	□□□□□ -2.43
LSM6	Q06406	YJL127W-A	YJL127W-A	117 nt		-0.1	□□□□□ -2.43
LSM6	Q06406	CMS1	YLR003C	876 nt		-0.1	□□□□□ -2.43
LSM6	Q06406	YLR252W	YLR252W	306 nt		-0.1	□□□□□ -2.43
LSM6	Q06406	RPL26A	YLR344W	384 nt		-0.1	□□□□□ -2.43
LSM6	Q06406	GIM5	YML094W	492 nt		-0.1	□□□□□ -2.43
LSM6	Q06406	YMR158C-A	YMR158C-A	138 nt		-0.1	□□□□□ -2.43
LSM6	Q06406	BIG1	YHR101C	1008 nt		-0.11	□□□□□ -2.43
LSM6	Q06406	DFG10	YIL049W	762 nt		-0.11	□□□□□ -2.43
LSM6	Q06406	GPX1	YKL026C	504 nt		-0.11	□□□□□ -2.43
LSM6	Q06406	COX7	YMR256C	183 nt		-0.11	□□□□□ -2.43
LSM6	Q06406	RCN2	YOR220W	798 nt		-0.11	□□□□□ -2.43
LSM6	Q06406	ESP1	YGR098C	4893 nt		-0.12	□□□□□ -2.43
LSM6	Q06406	YDL032W	YDL032W	312 nt		-0.12	□□□□□ -2.43
LSM6	Q06406	RUB1	YDR139C	234 nt		-0.12	□□□□□ -2.43
LSM6	Q06406	YDR344C	YDR344C	444 nt		-0.12	□□□□□ -2.43
LSM6	Q06406	ATG16	YMR159C	453 nt		-0.12	□□□□□ -2.43
LSM6	Q06406	snR84	snR84	550 nt		-0.13	□□□□□ -2.43
LSM6	Q06406	RPL32	YBL092W	393 nt		-0.13	□□□□□ -2.43
LSM6	Q06406	snR190	snR190	190 nt		-0.13	□□□□□ -2.43
LSM6	Q06406	MLP1	YKR095W	5628 nt		-0.13	□□□□□ -2.43
LSM6	Q06406	ENV11	YGR071C	2583 nt		-0.14	□□□□□ -2.43
LSM6	Q06406	VMA21	YGR105W	234 nt		-0.14	□□□□□ -2.43
LSM6	Q06406	YMR153C-A	YMR153C-A	336 nt		-0.14	□□□□□ -2.43
LSM6	Q06406	snR13	snR13	124 nt		-0.14	□□□□□ -2.43
LSM6	Q06406	DAD1	YDR016C	285 nt		-0.15	□□□□□ -2.43
LSM6	Q06406	SPO11	YHL022C	1197 nt		-0.15	□□□□□ -2.43
LSM6	Q06406	YLR232W	YLR232W	348 nt		-0.15	□□□□□ -2.43
LSM6	Q06406	MLP2	YIL149C	5040 nt		-0.15	□□□□□ -2.43
LSM6	Q06406	COG8	YML071C	1824 nt		-0.15	□□□□□ -2.43
LSM6	Q06406	BIR1	YJR089W	2865 nt		-0.16	□□□□□ -2.43
LSM6	Q06406	AI1	Q0050	2505 nt		-0.16	□□□□□ -2.43
LSM6	Q06406	PAN3	YKL025C	2040 nt		-0.16	□□□□□ -2.43
LSM6	Q06406	PKH2	YOL100W	3246 nt		-0.16	□□□□□ -2.43
LSM6	Q06406	IRC2	YDR112W	309 nt		-0.16	□□□□□ -2.44
LSM6	Q06406	QCR7	YDR529C	384 nt		-0.16	□□□□□ -2.44
LSM6	Q06406	RPC10	YHR143W-A	213 nt		-0.16	□□□□□ -2.44
LSM6	Q06406	BSC3	YLR465C	309 nt		-0.16	□□□□□ -2.44
LSM6	Q06406	UBC7	YMR022W	498 nt		-0.16	□□□□□ -2.44
LSM6	Q06406	MRPL50	YNR022C	420 nt		-0.16	□□□□□ -2.44
LSM6	Q06406	YPR099C	YPR099C	357 nt		-0.16	□□□□□ -2.44
LSM6	Q06406	snR59	snR59	78 nt		-0.17	□□□□□ -2.44
LSM6	Q06406	NPC2	YDL046W	522 nt		-0.17	□□□□□ -2.44
LSM6	Q06406	YDR008C	YDR008C	351 nt		-0.17	□□□□□ -2.44
LSM6	Q06406	YFR057W	YFR057W	456 nt		-0.17	□□□□□ -2.44
LSM6	Q06406	YHL042W	YHL042W	453 nt		-0.17	□□□□□ -2.44
LSM6	Q06406	FYV10	YIL097W	1551 nt		-0.17	□□□□□ -2.44
LSM6	Q06406	RPS30A	YLR287C-A	192 nt		-0.17	□□□□□ -2.44
LSM6	Q06406	CDC33	YOL139C	642 nt		-0.17	□□□□□ -2.44
LSM6	Q06406	COG4	YPR105C	2586 nt		-0.17	□□□□□ -2.44
LSM6	Q06406	YOR192C-B	YOR192C-B	5313 nt		-0.18	□□□□□ -2.44
LSM6	Q06406	tT(UGU)Q1	tT(UGU)Q1	76 nt		-0.18	□□□□□ -2.44
LSM6	Q06406	YBR071W	YBR071W	636 nt		-0.18	□□□□□ -2.44
LSM6	Q06406	YLL032C	YLL032C	2478 nt		-0.18	□□□□□ -2.44
LSM6	Q06406	PRP42	YDR235W	1635 nt		-0.18	□□□□□ -2.44
LSM6	Q06406	YER158W-A	YER158W-A	216 nt		-0.19	□□□□□ -2.44
LSM6	Q06406	YPL119C-A	YPL119C-A	264 nt		-0.19	□□□□□ -2.44
LSM6	Q06406	SEC8	YPR055W	3198 nt		-0.2	□□□□□ -2.44
LSM6	Q06406	RPL35A	YDL191W	363 nt		-0.2	□□□□□ -2.44
LSM6	Q06406	SSS1	YDR086C	243 nt		-0.2	□□□□□ -2.44
LSM6	Q06406	GPG1	YGL121C	381 nt		-0.2	□□□□□ -2.44
LSM6	Q06406	YJR140W-A	YJR140W-A	150 nt		-0.2	□□□□□ -2.44
LSM6	Q06406	YKL145W-A	YKL145W-A	93 nt		-0.2	□□□□□ -2.44
LSM6	Q06406	YBR121C-A	YBR121C-A	159 nt		-0.2	□□□□□ -2.44
LSM6	Q06406	MRPL31	YKL138C	396 nt		-0.22	□□□□□ -2.44
LSM6	Q06406	TYE7	YOR344C	876 nt		-0.22	□□□□□ -2.44
LSM6	Q06406	YOR364W	YOR364W	369 nt		-0.22	□□□□□ -2.44
LSM6	Q06406	RPS27A	YKL156W	249 nt		-0.23	□□□□□ -2.45
LSM6	Q06406	YOL106W	YOL106W	354 nt		-0.23	□□□□□ -2.45
LSM6	Q06406	snR34	snR34	203 nt		-0.23	□□□□□ -2.45
LSM6	Q06406	TIM10	YHR005C-A	282 nt		-0.24	□□□□□ -2.45
LSM6	Q06406	YHR054C	YHR054C	1065 nt		-0.24	□□□□□ -2.45
LSM6	Q06406	YOR029W	YOR029W	336 nt		-0.24	□□□□□ -2.45
LSM6	Q06406	YPL044C	YPL044C	549 nt		-0.24	□□□□□ -2.45
LSM6	Q06406	CSM4	YPL200W	471 nt		-0.24	□□□□□ -2.45
LSM6	Q06406	RCO1	YMR075W	2055 nt		-0.25	□□□□□ -2.45
LSM6	Q06406	CUL3	YGR003W	2235 nt		-0.25	□□□□□ -2.45
LSM6	Q06406	ULI1	YFR026C	510 nt		-0.25	□□□□□ -2.45
LSM6	Q06406	YHR050W-A	YHR050W-A	171 nt		-0.25	□□□□□ -2.45
LSM6	Q06406	ACF4	YJR083C	930 nt		-0.25	□□□□□ -2.45
LSM6	Q06406	YKL111C	YKL111C	336 nt		-0.25	□□□□□ -2.45
LSM6	Q06406	YLR146W-A	YLR146W-A	189 nt		-0.25	□□□□□ -2.45
LSM6	Q06406	TFB6	YOR352W	1032 nt		-0.25	□□□□□ -2.45
LSM6	Q06406	INP2	YMR163C	2118 nt		-0.26	□□□□□ -2.45
LSM6	Q06406	ORC3	YLL004W	1851 nt		-0.26	□□□□□ -2.45

Retrieved 100 of 7,029 protein–RNA pairs in 129.3 ms