Protein–RNA interactions for Protein: P28356

HOXD9, Homeobox protein Hox-D9, humanhuman

Predicted RBP Predictions only

Length 352 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD9P28356 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC20.7■□□□□ 0.9
HOXD9P28356 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC20.7■□□□□ 0.9
HOXD9P28356 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
HOXD9P28356 ABHD17AP6-201ENST00000458502 1044 ntBASIC20.7■□□□□ 0.9
HOXD9P28356 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC20.7■□□□□ 0.9
HOXD9P28356 AC093827.2-201ENST00000512654 315 ntBASIC20.7■□□□□ 0.9
HOXD9P28356 AC023632.3-201ENST00000521633 145 ntBASIC20.7■□□□□ 0.9
HOXD9P28356 RN7SL471P-201ENST00000580476 299 ntBASIC20.7■□□□□ 0.9
HOXD9P28356 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
HOXD9P28356 AL359736.2-201ENST00000621992 437 ntBASIC20.7■□□□□ 0.9
HOXD9P28356 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
HOXD9P28356 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC20.7■□□□□ 0.9
HOXD9P28356 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
HOXD9P28356 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
HOXD9P28356 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
HOXD9P28356 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
HOXD9P28356 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
HOXD9P28356 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
HOXD9P28356 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC20.7■□□□□ 0.9
HOXD9P28356 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
HOXD9P28356 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC20.69■□□□□ 0.9
HOXD9P28356 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC20.69■□□□□ 0.9
HOXD9P28356 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC20.69■□□□□ 0.9
HOXD9P28356 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
HOXD9P28356 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
HOXD9P28356 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC20.69■□□□□ 0.9
HOXD9P28356 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
HOXD9P28356 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
HOXD9P28356 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC20.69■□□□□ 0.9
HOXD9P28356 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
HOXD9P28356 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
HOXD9P28356 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
HOXD9P28356 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
HOXD9P28356 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
HOXD9P28356 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
HOXD9P28356 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC20.69■□□□□ 0.9
HOXD9P28356 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
HOXD9P28356 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
HOXD9P28356 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
HOXD9P28356 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
HOXD9P28356 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC20.68■□□□□ 0.9
HOXD9P28356 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC20.68■□□□□ 0.9
HOXD9P28356 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
HOXD9P28356 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
HOXD9P28356 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
HOXD9P28356 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
HOXD9P28356 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
HOXD9P28356 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
HOXD9P28356 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC20.68■□□□□ 0.9
HOXD9P28356 HES2-206ENST00000489730 730 ntTSL 2 BASIC20.68■□□□□ 0.9
HOXD9P28356 RNF121-214ENST00000533380 870 ntTSL 3 BASIC20.68■□□□□ 0.9
HOXD9P28356 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC20.68■□□□□ 0.9
HOXD9P28356 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC20.68■□□□□ 0.9
HOXD9P28356 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC20.68■□□□□ 0.9
HOXD9P28356 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC20.68■□□□□ 0.9
HOXD9P28356 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
HOXD9P28356 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC20.68■□□□□ 0.9
HOXD9P28356 PTBP1P-201ENST00000554374 1601 ntBASIC20.67■□□□□ 0.9
HOXD9P28356 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
HOXD9P28356 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
HOXD9P28356 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
HOXD9P28356 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
HOXD9P28356 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
HOXD9P28356 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC20.67■□□□□ 0.9
HOXD9P28356 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
HOXD9P28356 PEX7-202ENST00000367756 680 ntTSL 3 BASIC20.67■□□□□ 0.9
HOXD9P28356 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC20.67■□□□□ 0.9
HOXD9P28356 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC20.67■□□□□ 0.9
HOXD9P28356 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC20.67■□□□□ 0.9
HOXD9P28356 RPPH1-201ENST00000516869 333 ntBASIC20.67■□□□□ 0.9
HOXD9P28356 C1QBPP2-201ENST00000528754 825 ntBASIC20.67■□□□□ 0.9
HOXD9P28356 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC20.67■□□□□ 0.9
HOXD9P28356 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
HOXD9P28356 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC20.67■□□□□ 0.9
HOXD9P28356 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC20.67■□□□□ 0.9
HOXD9P28356 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC20.67■□□□□ 0.9
HOXD9P28356 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC20.67■□□□□ 0.9
HOXD9P28356 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC20.66■□□□□ 0.9
HOXD9P28356 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC20.66■□□□□ 0.9
HOXD9P28356 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
HOXD9P28356 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC20.66■□□□□ 0.9
HOXD9P28356 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC20.66■□□□□ 0.9
HOXD9P28356 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
HOXD9P28356 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC20.66■□□□□ 0.9
HOXD9P28356 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC20.66■□□□□ 0.9
HOXD9P28356 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
HOXD9P28356 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
HOXD9P28356 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC20.66■□□□□ 0.9
HOXD9P28356 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC20.65■□□□□ 0.9
HOXD9P28356 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
HOXD9P28356 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
HOXD9P28356 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
HOXD9P28356 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC20.65■□□□□ 0.9
HOXD9P28356 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
HOXD9P28356 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
HOXD9P28356 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
HOXD9P28356 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
HOXD9P28356 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
HOXD9P28356 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
HOXD9P28356 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms