Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
TRAV40A0A0B4J280 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
TRAV40A0A0B4J280 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
TRAV40A0A0B4J280 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC16.46■□□□□ 0.23
TRAV40A0A0B4J280 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
TRAV40A0A0B4J280 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
TRAV40A0A0B4J280 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
TRAV40A0A0B4J280 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
TRAV40A0A0B4J280 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC16.46■□□□□ 0.23
TRAV40A0A0B4J280 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC16.46■□□□□ 0.23
TRAV40A0A0B4J280 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC16.46■□□□□ 0.23
TRAV40A0A0B4J280 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
TRAV40A0A0B4J280 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC16.46■□□□□ 0.23
TRAV40A0A0B4J280 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC16.46■□□□□ 0.23
TRAV40A0A0B4J280 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
TRAV40A0A0B4J280 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC16.46■□□□□ 0.23
TRAV40A0A0B4J280 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
TRAV40A0A0B4J280 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
TRAV40A0A0B4J280 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
TRAV40A0A0B4J280 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC16.45■□□□□ 0.22
TRAV40A0A0B4J280 KRT8P36-201ENST00000489121 1440 ntBASIC16.45■□□□□ 0.22
TRAV40A0A0B4J280 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC16.45■□□□□ 0.22
TRAV40A0A0B4J280 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
TRAV40A0A0B4J280 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC16.45■□□□□ 0.22
TRAV40A0A0B4J280 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
TRAV40A0A0B4J280 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
TRAV40A0A0B4J280 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
TRAV40A0A0B4J280 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
TRAV40A0A0B4J280 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
TRAV40A0A0B4J280 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
TRAV40A0A0B4J280 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
TRAV40A0A0B4J280 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
TRAV40A0A0B4J280 AC239809.2-201ENST00000415381 517 ntBASIC16.45■□□□□ 0.22
TRAV40A0A0B4J280 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC16.45■□□□□ 0.22
TRAV40A0A0B4J280 AC008550.1-201ENST00000511500 884 ntBASIC16.45■□□□□ 0.22
TRAV40A0A0B4J280 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC16.45■□□□□ 0.22
TRAV40A0A0B4J280 SPIB-206ENST00000596074 847 ntTSL 2 BASIC16.45■□□□□ 0.22
TRAV40A0A0B4J280 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
TRAV40A0A0B4J280 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC16.45■□□□□ 0.22
TRAV40A0A0B4J280 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC16.45■□□□□ 0.22
TRAV40A0A0B4J280 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
TRAV40A0A0B4J280 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
TRAV40A0A0B4J280 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
TRAV40A0A0B4J280 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC16.45■□□□□ 0.22
TRAV40A0A0B4J280 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC16.45■□□□□ 0.22
TRAV40A0A0B4J280 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC16.45■□□□□ 0.22
TRAV40A0A0B4J280 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC16.45■□□□□ 0.22
TRAV40A0A0B4J280 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
TRAV40A0A0B4J280 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC16.45■□□□□ 0.22
TRAV40A0A0B4J280 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
TRAV40A0A0B4J280 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
TRAV40A0A0B4J280 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC16.45■□□□□ 0.22
TRAV40A0A0B4J280 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
TRAV40A0A0B4J280 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
TRAV40A0A0B4J280 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
TRAV40A0A0B4J280 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
TRAV40A0A0B4J280 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
TRAV40A0A0B4J280 AIRN-201ENST00000601203 4374 ntBASIC16.44■□□□□ 0.22
TRAV40A0A0B4J280 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
TRAV40A0A0B4J280 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
TRAV40A0A0B4J280 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC16.44■□□□□ 0.22
TRAV40A0A0B4J280 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC16.44■□□□□ 0.22
TRAV40A0A0B4J280 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC16.44■□□□□ 0.22
TRAV40A0A0B4J280 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
TRAV40A0A0B4J280 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
TRAV40A0A0B4J280 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
TRAV40A0A0B4J280 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
TRAV40A0A0B4J280 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
TRAV40A0A0B4J280 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
TRAV40A0A0B4J280 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC16.44■□□□□ 0.22
TRAV40A0A0B4J280 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC16.44■□□□□ 0.22
TRAV40A0A0B4J280 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
TRAV40A0A0B4J280 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC16.44■□□□□ 0.22
TRAV40A0A0B4J280 THEM4-205ENST00000489410 643 ntTSL 2 BASIC16.44■□□□□ 0.22
TRAV40A0A0B4J280 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC16.44■□□□□ 0.22
TRAV40A0A0B4J280 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC16.44■□□□□ 0.22
TRAV40A0A0B4J280 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC16.44■□□□□ 0.22
TRAV40A0A0B4J280 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC16.44■□□□□ 0.22
TRAV40A0A0B4J280 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC16.44■□□□□ 0.22
TRAV40A0A0B4J280 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
TRAV40A0A0B4J280 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
TRAV40A0A0B4J280 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
TRAV40A0A0B4J280 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
TRAV40A0A0B4J280 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
TRAV40A0A0B4J280 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
TRAV40A0A0B4J280 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
TRAV40A0A0B4J280 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
TRAV40A0A0B4J280 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
TRAV40A0A0B4J280 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
TRAV40A0A0B4J280 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC16.43■□□□□ 0.22
TRAV40A0A0B4J280 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
TRAV40A0A0B4J280 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC16.43■□□□□ 0.22
TRAV40A0A0B4J280 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
TRAV40A0A0B4J280 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC16.43■□□□□ 0.22
TRAV40A0A0B4J280 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC16.43■□□□□ 0.22
TRAV40A0A0B4J280 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
TRAV40A0A0B4J280 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
TRAV40A0A0B4J280 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
TRAV40A0A0B4J280 MIR718-201ENST00000390190 70 ntBASIC16.43■□□□□ 0.22
TRAV40A0A0B4J280 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC16.43■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 19.8 ms