Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC38.63■■■■□ 3.77
SHROOM4Q9ULL8 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC38.63■■■■□ 3.77
SHROOM4Q9ULL8 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC38.63■■■■□ 3.77
SHROOM4Q9ULL8 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC38.63■■■■□ 3.77
SHROOM4Q9ULL8 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC38.63■■■■□ 3.77
SHROOM4Q9ULL8 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC38.62■■■■□ 3.77
SHROOM4Q9ULL8 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC38.62■■■■□ 3.77
SHROOM4Q9ULL8 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC38.62■■■■□ 3.77
SHROOM4Q9ULL8 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC38.62■■■■□ 3.77
SHROOM4Q9ULL8 AL353807.1-201ENST00000427475 662 ntBASIC38.62■■■■□ 3.77
SHROOM4Q9ULL8 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC38.62■■■■□ 3.77
SHROOM4Q9ULL8 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC38.61■■■■□ 3.77
SHROOM4Q9ULL8 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC38.61■■■■□ 3.77
SHROOM4Q9ULL8 TUB-203ENST00000534099 1759 ntTSL 2 BASIC38.61■■■■□ 3.77
SHROOM4Q9ULL8 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC38.61■■■■□ 3.77
SHROOM4Q9ULL8 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC38.61■■■■□ 3.77
SHROOM4Q9ULL8 TERF1P1-201ENST00000311003 1181 ntBASIC38.6■■■■□ 3.77
SHROOM4Q9ULL8 AC005521.1-201ENST00000393351 872 ntBASIC38.6■■■■□ 3.77
SHROOM4Q9ULL8 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC38.6■■■■□ 3.77
SHROOM4Q9ULL8 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC38.6■■■■□ 3.77
SHROOM4Q9ULL8 AC005363.2-201ENST00000618631 242 ntBASIC38.6■■■■□ 3.77
SHROOM4Q9ULL8 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC38.6■■■■□ 3.77
SHROOM4Q9ULL8 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC38.6■■■■□ 3.77
SHROOM4Q9ULL8 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC38.6■■■■□ 3.77
SHROOM4Q9ULL8 Z98882.1-201ENST00000622160 2253 ntBASIC38.6■■■■□ 3.77
SHROOM4Q9ULL8 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC38.6■■■■□ 3.77
SHROOM4Q9ULL8 THEM4-205ENST00000489410 643 ntTSL 2 BASIC38.6■■■■□ 3.77
SHROOM4Q9ULL8 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC38.6■■■■□ 3.77
SHROOM4Q9ULL8 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC38.6■■■■□ 3.77
SHROOM4Q9ULL8 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC38.6■■■■□ 3.77
SHROOM4Q9ULL8 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC38.6■■■■□ 3.77
SHROOM4Q9ULL8 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC38.59■■■■□ 3.77
SHROOM4Q9ULL8 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC38.59■■■■□ 3.77
SHROOM4Q9ULL8 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC38.59■■■■□ 3.77
SHROOM4Q9ULL8 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC38.59■■■■□ 3.77
SHROOM4Q9ULL8 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC38.59■■■■□ 3.77
SHROOM4Q9ULL8 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC38.59■■■■□ 3.77
SHROOM4Q9ULL8 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC38.59■■■■□ 3.77
SHROOM4Q9ULL8 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC38.59■■■■□ 3.77
SHROOM4Q9ULL8 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC38.59■■■■□ 3.77
SHROOM4Q9ULL8 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC38.59■■■■□ 3.77
SHROOM4Q9ULL8 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC38.59■■■■□ 3.77
SHROOM4Q9ULL8 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC38.59■■■■□ 3.77
SHROOM4Q9ULL8 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC38.59■■■■□ 3.77
SHROOM4Q9ULL8 AC073508.3-201ENST00000619697 1419 ntBASIC38.59■■■■□ 3.77
SHROOM4Q9ULL8 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC38.59■■■■□ 3.77
SHROOM4Q9ULL8 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC38.58■■■■□ 3.77
SHROOM4Q9ULL8 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC38.58■■■■□ 3.77
SHROOM4Q9ULL8 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC38.58■■■■□ 3.77
SHROOM4Q9ULL8 SERP1-205ENST00000487153 657 ntTSL 4 BASIC38.58■■■■□ 3.77
SHROOM4Q9ULL8 LTBR-211ENST00000543190 785 ntTSL 3 BASIC38.58■■■■□ 3.77
SHROOM4Q9ULL8 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC38.58■■■■□ 3.77
SHROOM4Q9ULL8 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC38.58■■■■□ 3.77
SHROOM4Q9ULL8 GLDC-219ENST00000640208 420 ntTSL 2 BASIC38.58■■■■□ 3.77
SHROOM4Q9ULL8 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC38.58■■■■□ 3.77
SHROOM4Q9ULL8 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC38.58■■■■□ 3.77
SHROOM4Q9ULL8 AC244015.2-201ENST00000616358 1861 ntBASIC38.58■■■■□ 3.77
SHROOM4Q9ULL8 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC38.58■■■■□ 3.77
SHROOM4Q9ULL8 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC38.57■■■■□ 3.77
SHROOM4Q9ULL8 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC38.57■■■■□ 3.77
SHROOM4Q9ULL8 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC38.57■■■■□ 3.77
SHROOM4Q9ULL8 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC38.57■■■■□ 3.76
SHROOM4Q9ULL8 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC38.57■■■■□ 3.76
SHROOM4Q9ULL8 AF186192.3-201ENST00000583427 947 ntBASIC38.57■■■■□ 3.76
SHROOM4Q9ULL8 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC38.57■■■■□ 3.76
SHROOM4Q9ULL8 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC38.57■■■■□ 3.76
SHROOM4Q9ULL8 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC38.56■■■■□ 3.76
SHROOM4Q9ULL8 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC38.56■■■■□ 3.76
SHROOM4Q9ULL8 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC38.56■■■■□ 3.76
SHROOM4Q9ULL8 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC38.56■■■■□ 3.76
SHROOM4Q9ULL8 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC38.56■■■■□ 3.76
SHROOM4Q9ULL8 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC38.56■■■■□ 3.76
SHROOM4Q9ULL8 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC38.56■■■■□ 3.76
SHROOM4Q9ULL8 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC38.56■■■■□ 3.76
SHROOM4Q9ULL8 SRI-203ENST00000419179 1307 ntTSL 2 BASIC38.55■■■■□ 3.76
SHROOM4Q9ULL8 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC38.55■■■■□ 3.76
SHROOM4Q9ULL8 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC38.55■■■■□ 3.76
SHROOM4Q9ULL8 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC38.55■■■■□ 3.76
SHROOM4Q9ULL8 AL024507.2-201ENST00000606070 2574 ntBASIC38.55■■■■□ 3.76
SHROOM4Q9ULL8 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC38.55■■■■□ 3.76
SHROOM4Q9ULL8 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC38.55■■■■□ 3.76
SHROOM4Q9ULL8 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC38.54■■■■□ 3.76
SHROOM4Q9ULL8 RBM17P1-201ENST00000453646 1190 ntBASIC38.54■■■■□ 3.76
SHROOM4Q9ULL8 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC38.54■■■■□ 3.76
SHROOM4Q9ULL8 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC38.54■■■■□ 3.76
SHROOM4Q9ULL8 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC38.54■■■■□ 3.76
SHROOM4Q9ULL8 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC38.54■■■■□ 3.76
SHROOM4Q9ULL8 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC38.54■■■■□ 3.76
SHROOM4Q9ULL8 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC38.54■■■■□ 3.76
SHROOM4Q9ULL8 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC38.54■■■■□ 3.76
SHROOM4Q9ULL8 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC38.53■■■■□ 3.76
SHROOM4Q9ULL8 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC38.53■■■■□ 3.76
SHROOM4Q9ULL8 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC38.53■■■■□ 3.76
SHROOM4Q9ULL8 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC38.53■■■■□ 3.76
SHROOM4Q9ULL8 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC38.53■■■■□ 3.76
SHROOM4Q9ULL8 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC38.53■■■■□ 3.76
SHROOM4Q9ULL8 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC38.53■■■■□ 3.76
SHROOM4Q9ULL8 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC38.53■■■■□ 3.76
SHROOM4Q9ULL8 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC38.53■■■■□ 3.76
SHROOM4Q9ULL8 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC38.52■■■■□ 3.76
Retrieved 100 of 98,524 protein–RNA pairs in 55.3 ms