Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.44
COL12A1Q99715 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
COL12A1Q99715 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC17.82■□□□□ 0.44
COL12A1Q99715 STK25-205ENST00000405883 1904 ntTSL 2 BASIC17.82■□□□□ 0.44
COL12A1Q99715 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC17.82■□□□□ 0.44
COL12A1Q99715 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
COL12A1Q99715 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
COL12A1Q99715 AC069148.1-201ENST00000608741 768 ntBASIC17.82■□□□□ 0.44
COL12A1Q99715 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
COL12A1Q99715 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC17.82■□□□□ 0.44
COL12A1Q99715 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC17.82■□□□□ 0.44
COL12A1Q99715 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
COL12A1Q99715 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
COL12A1Q99715 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
COL12A1Q99715 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
COL12A1Q99715 AC139530.1-201ENST00000575312 1977 ntBASIC17.81■□□□□ 0.44
COL12A1Q99715 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC17.81■□□□□ 0.44
COL12A1Q99715 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC17.81■□□□□ 0.44
COL12A1Q99715 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC17.81■□□□□ 0.44
COL12A1Q99715 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
COL12A1Q99715 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
COL12A1Q99715 AL671883.3-201ENST00000603274 991 ntBASIC17.81■□□□□ 0.44
COL12A1Q99715 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC17.81■□□□□ 0.44
COL12A1Q99715 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC17.81■□□□□ 0.44
COL12A1Q99715 AC116050.2-201ENST00000612102 1779 ntBASIC17.81■□□□□ 0.44
COL12A1Q99715 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC17.81■□□□□ 0.44
COL12A1Q99715 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
COL12A1Q99715 ME2-206ENST00000638410 2289 ntTSL 5 BASIC17.8■□□□□ 0.44
COL12A1Q99715 ME2-210ENST00000639255 2262 ntTSL 5 BASIC17.8■□□□□ 0.44
COL12A1Q99715 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
COL12A1Q99715 RNF152P1-201ENST00000397754 604 ntBASIC17.8■□□□□ 0.44
COL12A1Q99715 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC17.8■□□□□ 0.44
COL12A1Q99715 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC17.8■□□□□ 0.44
COL12A1Q99715 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC17.8■□□□□ 0.44
COL12A1Q99715 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC17.8■□□□□ 0.44
COL12A1Q99715 AC068473.5-201ENST00000616428 2072 ntBASIC17.8■□□□□ 0.44
COL12A1Q99715 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
COL12A1Q99715 TSPY5P-201ENST00000426936 936 ntBASIC17.8■□□□□ 0.44
COL12A1Q99715 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC17.8■□□□□ 0.44
COL12A1Q99715 CR769767.2-201ENST00000622735 460 ntBASIC17.8■□□□□ 0.44
COL12A1Q99715 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
COL12A1Q99715 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC17.8■□□□□ 0.44
COL12A1Q99715 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
COL12A1Q99715 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC17.8■□□□□ 0.44
COL12A1Q99715 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
COL12A1Q99715 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL12A1Q99715 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC17.8■□□□□ 0.44
COL12A1Q99715 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC17.8■□□□□ 0.44
COL12A1Q99715 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL12A1Q99715 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL12A1Q99715 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL12A1Q99715 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL12A1Q99715 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
COL12A1Q99715 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
COL12A1Q99715 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC17.8■□□□□ 0.44
COL12A1Q99715 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC17.8■□□□□ 0.44
COL12A1Q99715 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL12A1Q99715 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC17.79■□□□□ 0.44
COL12A1Q99715 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL12A1Q99715 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
COL12A1Q99715 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
COL12A1Q99715 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC17.79■□□□□ 0.44
COL12A1Q99715 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC17.79■□□□□ 0.44
COL12A1Q99715 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL12A1Q99715 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
COL12A1Q99715 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC17.79■□□□□ 0.44
COL12A1Q99715 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC17.79■□□□□ 0.44
COL12A1Q99715 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL12A1Q99715 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
COL12A1Q99715 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
COL12A1Q99715 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
COL12A1Q99715 AC117947.1-201ENST00000427448 529 ntBASIC17.78■□□□□ 0.44
COL12A1Q99715 AC128688.1-201ENST00000487626 519 ntBASIC17.78■□□□□ 0.44
COL12A1Q99715 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
COL12A1Q99715 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC17.78■□□□□ 0.44
COL12A1Q99715 AC130371.2-201ENST00000619443 611 ntBASIC17.78■□□□□ 0.44
COL12A1Q99715 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC17.78■□□□□ 0.44
COL12A1Q99715 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
COL12A1Q99715 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
COL12A1Q99715 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
COL12A1Q99715 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
COL12A1Q99715 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC17.78■□□□□ 0.44
COL12A1Q99715 CLN6-221ENST00000637494 765 ntTSL 5 BASIC17.78■□□□□ 0.44
COL12A1Q99715 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
COL12A1Q99715 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
COL12A1Q99715 KRT8P45-201ENST00000414328 1447 ntBASIC17.78■□□□□ 0.44
COL12A1Q99715 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
COL12A1Q99715 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
COL12A1Q99715 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC17.78■□□□□ 0.44
COL12A1Q99715 RN7SL510P-201ENST00000581311 263 ntBASIC17.78■□□□□ 0.44
COL12A1Q99715 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
COL12A1Q99715 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC17.77■□□□□ 0.44
COL12A1Q99715 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
COL12A1Q99715 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
COL12A1Q99715 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
COL12A1Q99715 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
COL12A1Q99715 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
COL12A1Q99715 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC17.77■□□□□ 0.44
COL12A1Q99715 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
COL12A1Q99715 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 21.9 ms