Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
SYNE1Q8NF91 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC6.21□□□□□ -1.42
SYNE1Q8NF91 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
SYNE1Q8NF91 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC6.21□□□□□ -1.42
SYNE1Q8NF91 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC6.21□□□□□ -1.42
SYNE1Q8NF91 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC6.21□□□□□ -1.42
SYNE1Q8NF91 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC6.21□□□□□ -1.42
SYNE1Q8NF91 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC6.21□□□□□ -1.42
SYNE1Q8NF91 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
SYNE1Q8NF91 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC6.21□□□□□ -1.42
SYNE1Q8NF91 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
SYNE1Q8NF91 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC6.21□□□□□ -1.42
SYNE1Q8NF91 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
SYNE1Q8NF91 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
SYNE1Q8NF91 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC6.21□□□□□ -1.42
SYNE1Q8NF91 RNF146-206ENST00000480444 843 ntTSL 2 BASIC6.21□□□□□ -1.42
SYNE1Q8NF91 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC6.21□□□□□ -1.42
SYNE1Q8NF91 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC6.21□□□□□ -1.42
SYNE1Q8NF91 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
SYNE1Q8NF91 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
SYNE1Q8NF91 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
SYNE1Q8NF91 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC6.21□□□□□ -1.42
SYNE1Q8NF91 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC6.21□□□□□ -1.42
SYNE1Q8NF91 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC6.21□□□□□ -1.42
SYNE1Q8NF91 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC6.21□□□□□ -1.42
SYNE1Q8NF91 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC6.21□□□□□ -1.42
SYNE1Q8NF91 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC6.21□□□□□ -1.42
SYNE1Q8NF91 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
SYNE1Q8NF91 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC6.21□□□□□ -1.42
SYNE1Q8NF91 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC6.21□□□□□ -1.42
SYNE1Q8NF91 AL445228.2-201ENST00000605589 952 ntBASIC6.21□□□□□ -1.42
SYNE1Q8NF91 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC6.21□□□□□ -1.42
SYNE1Q8NF91 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
SYNE1Q8NF91 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
SYNE1Q8NF91 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
SYNE1Q8NF91 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC6.2□□□□□ -1.42
SYNE1Q8NF91 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC6.2□□□□□ -1.42
SYNE1Q8NF91 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC6.2□□□□□ -1.42
SYNE1Q8NF91 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
SYNE1Q8NF91 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
SYNE1Q8NF91 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
SYNE1Q8NF91 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
SYNE1Q8NF91 HES2-206ENST00000489730 730 ntTSL 2 BASIC6.2□□□□□ -1.42
SYNE1Q8NF91 RPPH1-201ENST00000516869 333 ntBASIC6.2□□□□□ -1.42
SYNE1Q8NF91 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC6.2□□□□□ -1.42
SYNE1Q8NF91 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC6.2□□□□□ -1.42
SYNE1Q8NF91 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC6.2□□□□□ -1.42
SYNE1Q8NF91 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
SYNE1Q8NF91 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
SYNE1Q8NF91 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC6.2□□□□□ -1.42
SYNE1Q8NF91 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC6.2□□□□□ -1.42
SYNE1Q8NF91 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC6.2□□□□□ -1.42
SYNE1Q8NF91 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC6.2□□□□□ -1.42
SYNE1Q8NF91 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC6.2□□□□□ -1.42
SYNE1Q8NF91 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC6.2□□□□□ -1.42
SYNE1Q8NF91 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC6.2□□□□□ -1.42
SYNE1Q8NF91 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC6.2□□□□□ -1.42
SYNE1Q8NF91 AL023875.1-201ENST00000640777 796 ntBASIC6.2□□□□□ -1.42
SYNE1Q8NF91 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
SYNE1Q8NF91 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
SYNE1Q8NF91 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
SYNE1Q8NF91 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
SYNE1Q8NF91 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC6.2□□□□□ -1.42
SYNE1Q8NF91 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC6.2□□□□□ -1.42
SYNE1Q8NF91 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
SYNE1Q8NF91 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
SYNE1Q8NF91 MFF-205ENST00000354503 1085 ntTSL 2 BASIC6.2□□□□□ -1.42
SYNE1Q8NF91 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
SYNE1Q8NF91 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC6.2□□□□□ -1.42
SYNE1Q8NF91 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC6.2□□□□□ -1.42
SYNE1Q8NF91 AC069544.1-201ENST00000609399 999 ntBASIC6.2□□□□□ -1.42
SYNE1Q8NF91 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
SYNE1Q8NF91 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC6.2□□□□□ -1.42
SYNE1Q8NF91 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
SYNE1Q8NF91 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC6.2□□□□□ -1.42
SYNE1Q8NF91 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC6.2□□□□□ -1.42
SYNE1Q8NF91 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
SYNE1Q8NF91 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
SYNE1Q8NF91 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC6.2□□□□□ -1.42
SYNE1Q8NF91 OR2A1-AS1-207ENST00000486094 819 ntBASIC6.2□□□□□ -1.42
SYNE1Q8NF91 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC6.2□□□□□ -1.42
SYNE1Q8NF91 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
SYNE1Q8NF91 NXN-202ENST00000537628 1340 ntTSL 3 BASIC6.2□□□□□ -1.42
SYNE1Q8NF91 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC6.2□□□□□ -1.42
SYNE1Q8NF91 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
SYNE1Q8NF91 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC6.2□□□□□ -1.42
SYNE1Q8NF91 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
SYNE1Q8NF91 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC6.2□□□□□ -1.42
SYNE1Q8NF91 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
SYNE1Q8NF91 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC6.2□□□□□ -1.42
SYNE1Q8NF91 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC6.2□□□□□ -1.42
SYNE1Q8NF91 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC6.2□□□□□ -1.42
SYNE1Q8NF91 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC6.2□□□□□ -1.42
SYNE1Q8NF91 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
SYNE1Q8NF91 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC6.2□□□□□ -1.42
SYNE1Q8NF91 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
SYNE1Q8NF91 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC6.2□□□□□ -1.42
SYNE1Q8NF91 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
SYNE1Q8NF91 PPOX-219ENST00000544598 813 ntTSL 2 BASIC6.2□□□□□ -1.42
SYNE1Q8NF91 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC6.2□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 42.5 ms