Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
CLRN3Q8NCR9 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC16.14■□□□□ 0.17
CLRN3Q8NCR9 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC16.14■□□□□ 0.17
CLRN3Q8NCR9 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
CLRN3Q8NCR9 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC16.14■□□□□ 0.17
CLRN3Q8NCR9 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CLRN3Q8NCR9 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC16.14■□□□□ 0.17
CLRN3Q8NCR9 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CLRN3Q8NCR9 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC16.14■□□□□ 0.17
CLRN3Q8NCR9 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CLRN3Q8NCR9 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
CLRN3Q8NCR9 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
CLRN3Q8NCR9 ECEL1P2-201ENST00000461596 1295 ntBASIC16.14■□□□□ 0.17
CLRN3Q8NCR9 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CLRN3Q8NCR9 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC16.14■□□□□ 0.17
CLRN3Q8NCR9 RARRES1-201ENST00000237696 1952 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CLRN3Q8NCR9 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CLRN3Q8NCR9 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
CLRN3Q8NCR9 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CLRN3Q8NCR9 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
CLRN3Q8NCR9 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CLRN3Q8NCR9 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC16.14■□□□□ 0.17
CLRN3Q8NCR9 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
CLRN3Q8NCR9 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC16.14■□□□□ 0.17
CLRN3Q8NCR9 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CLRN3Q8NCR9 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC16.14■□□□□ 0.17
CLRN3Q8NCR9 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
CLRN3Q8NCR9 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
CLRN3Q8NCR9 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
CLRN3Q8NCR9 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC16.13■□□□□ 0.17
CLRN3Q8NCR9 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC16.13■□□□□ 0.17
CLRN3Q8NCR9 FP325331.1-202ENST00000623531 1380 ntBASIC16.13■□□□□ 0.17
CLRN3Q8NCR9 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CLRN3Q8NCR9 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC16.13■□□□□ 0.17
CLRN3Q8NCR9 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC16.13■□□□□ 0.17
CLRN3Q8NCR9 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC16.13■□□□□ 0.17
CLRN3Q8NCR9 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC16.13■□□□□ 0.17
CLRN3Q8NCR9 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
CLRN3Q8NCR9 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CLRN3Q8NCR9 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC16.13■□□□□ 0.17
CLRN3Q8NCR9 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC16.13■□□□□ 0.17
CLRN3Q8NCR9 EML3-216ENST00000529309 2909 ntTSL 2 BASIC16.13■□□□□ 0.17
CLRN3Q8NCR9 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CLRN3Q8NCR9 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
CLRN3Q8NCR9 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
CLRN3Q8NCR9 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CLRN3Q8NCR9 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CLRN3Q8NCR9 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC16.13■□□□□ 0.17
CLRN3Q8NCR9 POLI-202ENST00000406285 2030 ntTSL 2 BASIC16.13■□□□□ 0.17
CLRN3Q8NCR9 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CLRN3Q8NCR9 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CLRN3Q8NCR9 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC16.13■□□□□ 0.17
CLRN3Q8NCR9 GPX1-201ENST00000419349 1106 ntBASIC16.13■□□□□ 0.17
CLRN3Q8NCR9 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC16.13■□□□□ 0.17
CLRN3Q8NCR9 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC16.13■□□□□ 0.17
CLRN3Q8NCR9 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CLRN3Q8NCR9 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CLRN3Q8NCR9 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CLRN3Q8NCR9 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC16.13■□□□□ 0.17
CLRN3Q8NCR9 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
CLRN3Q8NCR9 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CLRN3Q8NCR9 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC16.13■□□□□ 0.17
CLRN3Q8NCR9 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
CLRN3Q8NCR9 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CLRN3Q8NCR9 AC093484.2-201ENST00000580996 2166 ntBASIC16.13■□□□□ 0.17
CLRN3Q8NCR9 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
CLRN3Q8NCR9 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CLRN3Q8NCR9 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CLRN3Q8NCR9 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CLRN3Q8NCR9 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
CLRN3Q8NCR9 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CLRN3Q8NCR9 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
CLRN3Q8NCR9 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CLRN3Q8NCR9 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC16.12■□□□□ 0.17
CLRN3Q8NCR9 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC16.12■□□□□ 0.17
CLRN3Q8NCR9 INSR-201ENST00000302850 4721 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
CLRN3Q8NCR9 ABHD17AP3-201ENST00000503096 1137 ntBASIC16.12■□□□□ 0.17
CLRN3Q8NCR9 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC16.12■□□□□ 0.17
CLRN3Q8NCR9 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
CLRN3Q8NCR9 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC16.12■□□□□ 0.17
CLRN3Q8NCR9 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CLRN3Q8NCR9 HGNC:18790-203ENST00000433139 2254 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
CLRN3Q8NCR9 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
CLRN3Q8NCR9 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC16.12■□□□□ 0.17
CLRN3Q8NCR9 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CLRN3Q8NCR9 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
CLRN3Q8NCR9 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
CLRN3Q8NCR9 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC16.12■□□□□ 0.17
CLRN3Q8NCR9 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
CLRN3Q8NCR9 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC16.12■□□□□ 0.17
CLRN3Q8NCR9 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CLRN3Q8NCR9 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC16.11■□□□□ 0.17
CLRN3Q8NCR9 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
CLRN3Q8NCR9 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CLRN3Q8NCR9 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
CLRN3Q8NCR9 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CLRN3Q8NCR9 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
CLRN3Q8NCR9 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
CLRN3Q8NCR9 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CLRN3Q8NCR9 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms