Protein–RNA interactions for Protein: Q6UVK1

CSPG4, Chondroitin sulfate proteoglycan 4, humanhuman

Predictions only

Length 2,322 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4Q6UVK1 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CSPG4Q6UVK1 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
CSPG4Q6UVK1 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CSPG4Q6UVK1 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC16.73■□□□□ 0.27
CSPG4Q6UVK1 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC16.73■□□□□ 0.27
CSPG4Q6UVK1 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC16.73■□□□□ 0.27
CSPG4Q6UVK1 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
CSPG4Q6UVK1 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
CSPG4Q6UVK1 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CSPG4Q6UVK1 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CSPG4Q6UVK1 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
CSPG4Q6UVK1 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CSPG4Q6UVK1 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC16.73■□□□□ 0.27
CSPG4Q6UVK1 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC16.73■□□□□ 0.27
CSPG4Q6UVK1 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CSPG4Q6UVK1 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CSPG4Q6UVK1 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CSPG4Q6UVK1 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
CSPG4Q6UVK1 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC16.73■□□□□ 0.27
CSPG4Q6UVK1 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC16.73■□□□□ 0.27
CSPG4Q6UVK1 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC16.73■□□□□ 0.27
CSPG4Q6UVK1 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
CSPG4Q6UVK1 RPS15-203ENST00000586096 570 ntTSL 2 BASIC16.73■□□□□ 0.27
CSPG4Q6UVK1 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC16.73■□□□□ 0.27
CSPG4Q6UVK1 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CSPG4Q6UVK1 PALM-207ENST00000590161 2137 ntTSL 4 BASIC16.72■□□□□ 0.27
CSPG4Q6UVK1 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CSPG4Q6UVK1 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
CSPG4Q6UVK1 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
CSPG4Q6UVK1 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CSPG4Q6UVK1 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
CSPG4Q6UVK1 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC16.72■□□□□ 0.27
CSPG4Q6UVK1 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC16.72■□□□□ 0.27
CSPG4Q6UVK1 REXO1L10P-201ENST00000615707 1290 ntBASIC16.72■□□□□ 0.27
CSPG4Q6UVK1 AC010947.1-201ENST00000623454 693 ntBASIC16.72■□□□□ 0.27
CSPG4Q6UVK1 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CSPG4Q6UVK1 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
CSPG4Q6UVK1 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC16.72■□□□□ 0.27
CSPG4Q6UVK1 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CSPG4Q6UVK1 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CSPG4Q6UVK1 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC16.72■□□□□ 0.27
CSPG4Q6UVK1 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CSPG4Q6UVK1 HTR7P1-201ENST00000538670 1336 ntBASIC16.72■□□□□ 0.27
CSPG4Q6UVK1 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC16.72■□□□□ 0.27
CSPG4Q6UVK1 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
CSPG4Q6UVK1 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
CSPG4Q6UVK1 TERF1P1-201ENST00000311003 1181 ntBASIC16.71■□□□□ 0.27
CSPG4Q6UVK1 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
CSPG4Q6UVK1 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
CSPG4Q6UVK1 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC16.71■□□□□ 0.27
CSPG4Q6UVK1 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
CSPG4Q6UVK1 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC16.71■□□□□ 0.27
CSPG4Q6UVK1 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC16.71■□□□□ 0.27
CSPG4Q6UVK1 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC16.71■□□□□ 0.27
CSPG4Q6UVK1 DECR2-212ENST00000627716 352 ntTSL 2 BASIC16.71■□□□□ 0.27
CSPG4Q6UVK1 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC16.71■□□□□ 0.27
CSPG4Q6UVK1 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
CSPG4Q6UVK1 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
CSPG4Q6UVK1 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
CSPG4Q6UVK1 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
CSPG4Q6UVK1 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CSPG4Q6UVK1 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
CSPG4Q6UVK1 GALC-202ENST00000393568 2054 ntTSL 2 BASIC16.71■□□□□ 0.27
CSPG4Q6UVK1 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
CSPG4Q6UVK1 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
CSPG4Q6UVK1 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
CSPG4Q6UVK1 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC16.71■□□□□ 0.27
CSPG4Q6UVK1 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
CSPG4Q6UVK1 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC16.71■□□□□ 0.27
CSPG4Q6UVK1 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
CSPG4Q6UVK1 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
CSPG4Q6UVK1 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
CSPG4Q6UVK1 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC16.71■□□□□ 0.27
CSPG4Q6UVK1 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
CSPG4Q6UVK1 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
CSPG4Q6UVK1 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
CSPG4Q6UVK1 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
CSPG4Q6UVK1 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CSPG4Q6UVK1 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
CSPG4Q6UVK1 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CSPG4Q6UVK1 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CSPG4Q6UVK1 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC16.7■□□□□ 0.26
CSPG4Q6UVK1 DUX4L26-201ENST00000489078 1255 ntBASIC16.7■□□□□ 0.26
CSPG4Q6UVK1 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC16.7■□□□□ 0.26
CSPG4Q6UVK1 EXOC3-AS1-202ENST00000623673 1663 ntBASIC16.7■□□□□ 0.26
CSPG4Q6UVK1 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC16.7■□□□□ 0.26
CSPG4Q6UVK1 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CSPG4Q6UVK1 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
CSPG4Q6UVK1 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CSPG4Q6UVK1 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CSPG4Q6UVK1 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CSPG4Q6UVK1 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CSPG4Q6UVK1 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CSPG4Q6UVK1 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
CSPG4Q6UVK1 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC16.7■□□□□ 0.26
CSPG4Q6UVK1 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC16.7■□□□□ 0.26
CSPG4Q6UVK1 WWOX-216ENST00000569818 525 ntBASIC16.7■□□□□ 0.26
CSPG4Q6UVK1 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC16.7■□□□□ 0.26
CSPG4Q6UVK1 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC16.7■□□□□ 0.26
CSPG4Q6UVK1 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC16.7■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 24.5 ms