Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC17.37■□□□□ 0.37
USF3Q68DE3 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC17.37■□□□□ 0.37
USF3Q68DE3 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
USF3Q68DE3 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
USF3Q68DE3 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
USF3Q68DE3 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
USF3Q68DE3 RPS20-210ENST00000523936 899 ntTSL 2 BASIC17.37■□□□□ 0.37
USF3Q68DE3 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC17.37■□□□□ 0.37
USF3Q68DE3 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC17.37■□□□□ 0.37
USF3Q68DE3 AC120498.8-201ENST00000614275 531 ntBASIC17.37■□□□□ 0.37
USF3Q68DE3 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
USF3Q68DE3 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC17.37■□□□□ 0.37
USF3Q68DE3 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
USF3Q68DE3 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
USF3Q68DE3 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
USF3Q68DE3 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
USF3Q68DE3 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC17.37■□□□□ 0.37
USF3Q68DE3 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
USF3Q68DE3 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
USF3Q68DE3 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
USF3Q68DE3 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC17.36■□□□□ 0.37
USF3Q68DE3 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
USF3Q68DE3 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC17.36■□□□□ 0.37
USF3Q68DE3 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
USF3Q68DE3 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
USF3Q68DE3 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
USF3Q68DE3 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
USF3Q68DE3 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
USF3Q68DE3 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
USF3Q68DE3 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
USF3Q68DE3 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC17.36■□□□□ 0.37
USF3Q68DE3 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
USF3Q68DE3 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
USF3Q68DE3 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
USF3Q68DE3 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
USF3Q68DE3 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC17.36■□□□□ 0.37
USF3Q68DE3 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC17.36■□□□□ 0.37
USF3Q68DE3 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
USF3Q68DE3 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC17.36■□□□□ 0.37
USF3Q68DE3 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
USF3Q68DE3 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
USF3Q68DE3 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC17.36■□□□□ 0.37
USF3Q68DE3 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC17.35■□□□□ 0.37
USF3Q68DE3 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
USF3Q68DE3 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
USF3Q68DE3 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC17.35■□□□□ 0.37
USF3Q68DE3 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC17.35■□□□□ 0.37
USF3Q68DE3 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC17.35■□□□□ 0.37
USF3Q68DE3 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
USF3Q68DE3 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
USF3Q68DE3 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC17.35■□□□□ 0.37
USF3Q68DE3 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC17.35■□□□□ 0.37
USF3Q68DE3 RN7SL471P-201ENST00000580476 299 ntBASIC17.35■□□□□ 0.37
USF3Q68DE3 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC17.35■□□□□ 0.37
USF3Q68DE3 SPIB-206ENST00000596074 847 ntTSL 2 BASIC17.35■□□□□ 0.37
USF3Q68DE3 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC17.35■□□□□ 0.37
USF3Q68DE3 MFF-203ENST00000349901 1716 ntTSL 2 BASIC17.35■□□□□ 0.37
USF3Q68DE3 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
USF3Q68DE3 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC17.35■□□□□ 0.37
USF3Q68DE3 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
USF3Q68DE3 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
USF3Q68DE3 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC17.35■□□□□ 0.37
USF3Q68DE3 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC17.35■□□□□ 0.37
USF3Q68DE3 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
USF3Q68DE3 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC17.35■□□□□ 0.37
USF3Q68DE3 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC17.35■□□□□ 0.37
USF3Q68DE3 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
USF3Q68DE3 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC17.35■□□□□ 0.37
USF3Q68DE3 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC17.35■□□□□ 0.37
USF3Q68DE3 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
USF3Q68DE3 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC17.35■□□□□ 0.37
USF3Q68DE3 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC17.35■□□□□ 0.37
USF3Q68DE3 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC17.35■□□□□ 0.37
USF3Q68DE3 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC17.34■□□□□ 0.37
USF3Q68DE3 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
USF3Q68DE3 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC17.34■□□□□ 0.37
USF3Q68DE3 EXOC3-AS1-202ENST00000623673 1663 ntBASIC17.34■□□□□ 0.37
USF3Q68DE3 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
USF3Q68DE3 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC17.34■□□□□ 0.37
USF3Q68DE3 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC17.34■□□□□ 0.37
USF3Q68DE3 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC17.34■□□□□ 0.37
USF3Q68DE3 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC17.34■□□□□ 0.37
USF3Q68DE3 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC17.34■□□□□ 0.37
USF3Q68DE3 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
USF3Q68DE3 C2orf69P4-201ENST00000565394 541 ntBASIC17.34■□□□□ 0.37
USF3Q68DE3 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
USF3Q68DE3 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC17.34■□□□□ 0.37
USF3Q68DE3 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
USF3Q68DE3 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
USF3Q68DE3 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
USF3Q68DE3 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
USF3Q68DE3 AC239809.2-201ENST00000415381 517 ntBASIC17.33■□□□□ 0.37
USF3Q68DE3 AC133681.1-201ENST00000465482 601 ntBASIC17.33■□□□□ 0.37
USF3Q68DE3 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC17.33■□□□□ 0.37
USF3Q68DE3 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
USF3Q68DE3 AL023875.1-201ENST00000640777 796 ntBASIC17.33■□□□□ 0.37
USF3Q68DE3 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC17.33■□□□□ 0.37
USF3Q68DE3 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.37
USF3Q68DE3 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC17.33■□□□□ 0.36
USF3Q68DE3 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 19.8 ms