Protein–RNA interactions for Protein: Q4VC31

CCDC58, Coiled-coil domain-containing protein 58, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58Q4VC31 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC18■□□□□ 0.47
CCDC58Q4VC31 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CCDC58Q4VC31 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC18■□□□□ 0.47
CCDC58Q4VC31 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC18■□□□□ 0.47
CCDC58Q4VC31 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC18■□□□□ 0.47
CCDC58Q4VC31 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC18■□□□□ 0.47
CCDC58Q4VC31 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
CCDC58Q4VC31 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CCDC58Q4VC31 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC58Q4VC31 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC17.99■□□□□ 0.47
CCDC58Q4VC31 AC135279.3-201ENST00000610945 1311 ntBASIC17.99■□□□□ 0.47
CCDC58Q4VC31 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC58Q4VC31 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC17.99■□□□□ 0.47
CCDC58Q4VC31 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC58Q4VC31 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC17.99■□□□□ 0.47
CCDC58Q4VC31 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC58Q4VC31 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC58Q4VC31 MIR572-201ENST00000384983 95 ntBASIC17.99■□□□□ 0.47
CCDC58Q4VC31 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC17.99■□□□□ 0.47
CCDC58Q4VC31 AL136162.1-201ENST00000607711 1078 ntBASIC17.99■□□□□ 0.47
CCDC58Q4VC31 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC17.99■□□□□ 0.47
CCDC58Q4VC31 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC17.99■□□□□ 0.47
CCDC58Q4VC31 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC58Q4VC31 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC58Q4VC31 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC17.99■□□□□ 0.47
CCDC58Q4VC31 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC58Q4VC31 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC58Q4VC31 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC17.99■□□□□ 0.47
CCDC58Q4VC31 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC17.99■□□□□ 0.47
CCDC58Q4VC31 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC17.99■□□□□ 0.47
CCDC58Q4VC31 FZD10-202ENST00000539839 3282 ntBASIC17.99■□□□□ 0.47
CCDC58Q4VC31 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC17.98■□□□□ 0.47
CCDC58Q4VC31 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CCDC58Q4VC31 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC17.98■□□□□ 0.47
CCDC58Q4VC31 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CCDC58Q4VC31 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC17.98■□□□□ 0.47
CCDC58Q4VC31 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CCDC58Q4VC31 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC17.98■□□□□ 0.47
CCDC58Q4VC31 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CCDC58Q4VC31 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC17.98■□□□□ 0.47
CCDC58Q4VC31 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CCDC58Q4VC31 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CCDC58Q4VC31 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
CCDC58Q4VC31 GRAMD4P2-201ENST00000423297 1097 ntBASIC17.98■□□□□ 0.47
CCDC58Q4VC31 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
CCDC58Q4VC31 AC027682.1-201ENST00000562846 899 ntBASIC17.98■□□□□ 0.47
CCDC58Q4VC31 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC17.98■□□□□ 0.47
CCDC58Q4VC31 AC008764.7-201ENST00000593779 1081 ntBASIC17.98■□□□□ 0.47
CCDC58Q4VC31 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC17.98■□□□□ 0.47
CCDC58Q4VC31 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
CCDC58Q4VC31 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC17.98■□□□□ 0.47
CCDC58Q4VC31 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CCDC58Q4VC31 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CCDC58Q4VC31 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
CCDC58Q4VC31 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CCDC58Q4VC31 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC17.98■□□□□ 0.47
CCDC58Q4VC31 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC17.98■□□□□ 0.47
CCDC58Q4VC31 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC17.98■□□□□ 0.47
CCDC58Q4VC31 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC17.98■□□□□ 0.47
CCDC58Q4VC31 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CCDC58Q4VC31 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
CCDC58Q4VC31 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC17.97■□□□□ 0.47
CCDC58Q4VC31 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
CCDC58Q4VC31 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
CCDC58Q4VC31 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
CCDC58Q4VC31 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CCDC58Q4VC31 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CCDC58Q4VC31 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
CCDC58Q4VC31 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CCDC58Q4VC31 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
CCDC58Q4VC31 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC17.97■□□□□ 0.47
CCDC58Q4VC31 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC17.97■□□□□ 0.47
CCDC58Q4VC31 AC099791.1-201ENST00000416440 715 ntBASIC17.97■□□□□ 0.47
CCDC58Q4VC31 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
CCDC58Q4VC31 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
CCDC58Q4VC31 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
CCDC58Q4VC31 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC17.97■□□□□ 0.47
CCDC58Q4VC31 CPT2-209ENST00000636935 803 ntTSL 5 BASIC17.97■□□□□ 0.47
CCDC58Q4VC31 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC17.97■□□□□ 0.47
CCDC58Q4VC31 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CCDC58Q4VC31 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC17.97■□□□□ 0.47
CCDC58Q4VC31 AR-207ENST00000612010 3896 ntTSL 5 BASIC17.97■□□□□ 0.47
CCDC58Q4VC31 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
CCDC58Q4VC31 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CCDC58Q4VC31 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC17.97■□□□□ 0.47
CCDC58Q4VC31 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC17.97■□□□□ 0.47
CCDC58Q4VC31 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
CCDC58Q4VC31 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC17.97■□□□□ 0.47
CCDC58Q4VC31 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CCDC58Q4VC31 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CCDC58Q4VC31 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CCDC58Q4VC31 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CCDC58Q4VC31 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
CCDC58Q4VC31 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
CCDC58Q4VC31 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC17.96■□□□□ 0.47
CCDC58Q4VC31 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC17.96■□□□□ 0.47
CCDC58Q4VC31 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC17.96■□□□□ 0.47
CCDC58Q4VC31 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CCDC58Q4VC31 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
CCDC58Q4VC31 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 53.8 ms