Protein–RNA interactions for Protein: P54753

EPHB3, Ephrin type-B receptor 3, humanhuman

Predictions only

Length 998 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EPHB3P54753 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC21.2■□□□□ 0.98
EPHB3P54753 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC21.2■□□□□ 0.98
EPHB3P54753 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC21.2■□□□□ 0.98
EPHB3P54753 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC21.2■□□□□ 0.98
EPHB3P54753 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
EPHB3P54753 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC21.2■□□□□ 0.98
EPHB3P54753 PKD1P6-201ENST00000343738 4769 ntBASIC21.2■□□□□ 0.98
EPHB3P54753 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
EPHB3P54753 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC21.2■□□□□ 0.98
EPHB3P54753 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
EPHB3P54753 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
EPHB3P54753 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
EPHB3P54753 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
EPHB3P54753 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC21.19■□□□□ 0.98
EPHB3P54753 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
EPHB3P54753 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC21.19■□□□□ 0.98
EPHB3P54753 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
EPHB3P54753 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
EPHB3P54753 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
EPHB3P54753 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
EPHB3P54753 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
EPHB3P54753 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
EPHB3P54753 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
EPHB3P54753 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
EPHB3P54753 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
EPHB3P54753 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
EPHB3P54753 STK25-234ENST00000535007 2459 ntTSL 2 BASIC21.18■□□□□ 0.98
EPHB3P54753 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC21.18■□□□□ 0.98
EPHB3P54753 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
EPHB3P54753 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC21.18■□□□□ 0.98
EPHB3P54753 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC21.18■□□□□ 0.98
EPHB3P54753 TK2-204ENST00000525974 1178 ntTSL 2 BASIC21.18■□□□□ 0.98
EPHB3P54753 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC21.18■□□□□ 0.98
EPHB3P54753 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
EPHB3P54753 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC21.18■□□□□ 0.98
EPHB3P54753 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
EPHB3P54753 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
EPHB3P54753 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
EPHB3P54753 FEM1AP4-201ENST00000443167 1987 ntBASIC21.17■□□□□ 0.98
EPHB3P54753 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
EPHB3P54753 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
EPHB3P54753 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
EPHB3P54753 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC21.17■□□□□ 0.98
EPHB3P54753 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
EPHB3P54753 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC21.17■□□□□ 0.98
EPHB3P54753 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC21.17■□□□□ 0.98
EPHB3P54753 AC012618.2-201ENST00000428058 849 ntBASIC21.17■□□□□ 0.98
EPHB3P54753 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
EPHB3P54753 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
EPHB3P54753 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC21.17■□□□□ 0.98
EPHB3P54753 SNORA78-201ENST00000459373 127 ntBASIC21.17■□□□□ 0.98
EPHB3P54753 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
EPHB3P54753 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC21.17■□□□□ 0.98
EPHB3P54753 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC21.17■□□□□ 0.98
EPHB3P54753 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC21.17■□□□□ 0.98
EPHB3P54753 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
EPHB3P54753 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC21.17■□□□□ 0.98
EPHB3P54753 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
EPHB3P54753 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC21.17■□□□□ 0.98
EPHB3P54753 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC21.17■□□□□ 0.98
EPHB3P54753 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC21.17■□□□□ 0.98
EPHB3P54753 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC21.16■□□□□ 0.98
EPHB3P54753 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
EPHB3P54753 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
EPHB3P54753 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
EPHB3P54753 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
EPHB3P54753 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
EPHB3P54753 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
EPHB3P54753 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC21.16■□□□□ 0.98
EPHB3P54753 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC21.16■□□□□ 0.98
EPHB3P54753 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
EPHB3P54753 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
EPHB3P54753 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
EPHB3P54753 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
EPHB3P54753 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC21.16■□□□□ 0.98
EPHB3P54753 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
EPHB3P54753 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
EPHB3P54753 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC21.16■□□□□ 0.98
EPHB3P54753 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
EPHB3P54753 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
EPHB3P54753 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
EPHB3P54753 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
EPHB3P54753 AL135905.2-201ENST00000584934 1404 ntBASIC21.15■□□□□ 0.98
EPHB3P54753 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
EPHB3P54753 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
EPHB3P54753 MDFI-202ENST00000373050 809 ntTSL 2 BASIC21.15■□□□□ 0.98
EPHB3P54753 RPS2P55-201ENST00000397318 883 ntBASIC21.15■□□□□ 0.98
EPHB3P54753 AC107956.1-201ENST00000494359 873 ntBASIC21.15■□□□□ 0.98
EPHB3P54753 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
EPHB3P54753 AC233702.5-201ENST00000584107 538 ntBASIC21.15■□□□□ 0.98
EPHB3P54753 AP001412.1-201ENST00000608405 714 ntBASIC21.15■□□□□ 0.98
EPHB3P54753 AL121829.2-201ENST00000620908 328 ntBASIC21.15■□□□□ 0.98
EPHB3P54753 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
EPHB3P54753 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
EPHB3P54753 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
EPHB3P54753 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC21.15■□□□□ 0.98
EPHB3P54753 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
EPHB3P54753 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC21.15■□□□□ 0.98
EPHB3P54753 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC21.14■□□□□ 0.98
EPHB3P54753 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC21.14■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms