Protein–RNA interactions for Protein: P40965

MSH4, MutS protein homolog 4, yeastyeast

Predicted RBP Predictions only

Length 878 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
MSH4P40965 tW(CCA)KtW(CCA)K 72 nt3.12□□□□□ -1.91
MSH4P40965 tW(CCA)MtW(CCA)M 72 nt3.12□□□□□ -1.91
MSH4P40965 tW(CCA)PtW(CCA)P 72 nt3.12□□□□□ -1.91
MSH4P40965 NUT2YPR168W 474 nt3.12□□□□□ -1.91
MSH4P40965 SEC5YDR166C 2916 nt3.12□□□□□ -1.91
MSH4P40965 YIL080WYIL080W 4722 nt3.12□□□□□ -1.91
MSH4P40965 ALK2YBL009W 2031 nt3.12□□□□□ -1.91
MSH4P40965 GUP1YGL084C 1683 nt3.11□□□□□ -1.91
MSH4P40965 NUP120YKL057C 3114 nt3.11□□□□□ -1.91
MSH4P40965 BPT1YLL015W 4680 nt3.11□□□□□ -1.91
MSH4P40965 SSS1YDR086C 243 nt3.11□□□□□ -1.91
MSH4P40965 YAL042C-AYAL042C-A 378 nt3.11□□□□□ -1.91
MSH4P40965 RTC6YPL183W-A 282 nt3.11□□□□□ -1.91
MSH4P40965 KSP1YHR082C 3090 nt3.11□□□□□ -1.91
MSH4P40965 RLI1YDR091C 1827 nt3.11□□□□□ -1.91
MSH4P40965 IPT1YDR072C 1584 nt3.11□□□□□ -1.91
MSH4P40965 NAB3YPL190C 2409 nt3.11□□□□□ -1.91
MSH4P40965 SGS1YMR190C 4344 nt3.11□□□□□ -1.91
MSH4P40965 BCK1YJL095W 4437 nt3.11□□□□□ -1.91
MSH4P40965 PAN3YKL025C 2040 nt3.1□□□□□ -1.91
MSH4P40965 TOF2YKR010C 2316 nt3.1□□□□□ -1.91
MSH4P40965 YJL070CYJL070C 2667 nt3.1□□□□□ -1.91
MSH4P40965 CUL3YGR003W 2235 nt3.1□□□□□ -1.91
MSH4P40965 INA22YIR024C 651 nt3.1□□□□□ -1.91
MSH4P40965 YOR381W-AYOR381W-A 168 nt3.1□□□□□ -1.91
MSH4P40965 YPR092WYPR092W 306 nt3.1□□□□□ -1.91
MSH4P40965 snR52snR52 92 nt3.1□□□□□ -1.91
MSH4P40965 HRD3YLR207W 2502 nt3.1□□□□□ -1.91
MSH4P40965 YPR002C-AYPR002C-A 198 nt3.09□□□□□ -1.91
MSH4P40965 TMN3YER113C 2121 nt3.08□□□□□ -1.92
MSH4P40965 NEW1YPL226W 3591 nt3.08□□□□□ -1.92
MSH4P40965 YDR286CYDR286C 345 nt3.08□□□□□ -1.92
MSH4P40965 SGD1YLR336C 2700 nt3.08□□□□□ -1.92
MSH4P40965 YGL014C-AYGL014C-A 162 nt3.07□□□□□ -1.92
MSH4P40965 RPS27BYHR021C 249 nt3.07□□□□□ -1.92
MSH4P40965 SNC2YOR327C 348 nt3.07□□□□□ -1.92
MSH4P40965 YOR333CYOR333C 417 nt3.07□□□□□ -1.92
MSH4P40965 FKS3YMR306W 5358 nt3.07□□□□□ -1.92
MSH4P40965 PTP3YER075C 2787 nt3.07□□□□□ -1.92
MSH4P40965 YIR030W-AYIR030W-A 384 nt3.06□□□□□ -1.92
MSH4P40965 CFT2YLR115W 2580 nt3.06□□□□□ -1.92
MSH4P40965 HSC82YMR186W 2118 nt3.06□□□□□ -1.92
MSH4P40965 YBR131C-AYBR131C-A 90 nt3.06□□□□□ -1.92
MSH4P40965 MPH1YIR002C 2982 nt3.06□□□□□ -1.92
MSH4P40965 VPS54YDR027C 2670 nt3.06□□□□□ -1.92
MSH4P40965 ORC2YBR060C 1863 nt3.05□□□□□ -1.92
MSH4P40965 YBT1YLL048C 4986 nt3.05□□□□□ -1.92
MSH4P40965 INP51YIL002C 2841 nt3.05□□□□□ -1.92
MSH4P40965 MMS1YPR164W 4224 nt3.05□□□□□ -1.92
MSH4P40965 HYP2YEL034W 474 nt3.05□□□□□ -1.92
MSH4P40965 LSM7YNL147W 348 nt3.05□□□□□ -1.92
MSH4P40965 SPT21YMR179W 2277 nt3.04□□□□□ -1.92
MSH4P40965 INP53YOR109W 3324 nt3.04□□□□□ -1.92
MSH4P40965 YDL025W-AYDL025W-A 105 nt3.04□□□□□ -1.92
MSH4P40965 snR74snR74 88 nt3.04□□□□□ -1.92
MSH4P40965 EMC6YLL014W 327 nt3.04□□□□□ -1.92
MSH4P40965 GRX8YLR364W 330 nt3.04□□□□□ -1.92
MSH4P40965 VMA9YCL005W-A 222 nt3.04□□□□□ -1.92
MSH4P40965 SEC26YDR238C 2922 nt3.04□□□□□ -1.92
MSH4P40965 RPO41YFL036W 4056 nt3.04□□□□□ -1.92
MSH4P40965 SWA2YDR320C 2007 nt3.03□□□□□ -1.92
MSH4P40965 RIF1YBR275C 5751 nt3.03□□□□□ -1.92
MSH4P40965 PEX8YGR077C 1770 nt3.03□□□□□ -1.92
MSH4P40965 MMS22YLR320W 4365 nt3.03□□□□□ -1.92
MSH4P40965 UBP11YKR098C 2154 nt3.03□□□□□ -1.92
MSH4P40965 PTC5YOR090C 1719 nt3.03□□□□□ -1.92
MSH4P40965 ACB1YGR037C 264 nt3.03□□□□□ -1.92
MSH4P40965 BNR1YIL159W 4128 nt3.03□□□□□ -1.92
MSH4P40965 AMS1YGL156W 3252 nt3.02□□□□□ -1.93
MSH4P40965 YDR239CYDR239C 2364 nt3.02□□□□□ -1.93
MSH4P40965 EFR3YMR212C 2349 nt3.02□□□□□ -1.93
MSH4P40965 AXL1YPR122W 3627 nt3.02□□□□□ -1.93
MSH4P40965 YDR186CYDR186C 2634 nt3.02□□□□□ -1.93
MSH4P40965 YGR050CYGR050C 357 nt3.02□□□□□ -1.93
MSH4P40965 YHR032W-AYHR032W-A 180 nt3.02□□□□□ -1.93
MSH4P40965 YIL174WYIL174W 228 nt3.02□□□□□ -1.93
MSH4P40965 YJL222W-AYJL222W-A 228 nt3.02□□□□□ -1.93
MSH4P40965 YBL053WYBL053W 375 nt3.02□□□□□ -1.93
MSH4P40965 VPS16YPL045W 2397 nt3.02□□□□□ -1.93
MSH4P40965 PLC1YPL268W 2610 nt3.02□□□□□ -1.93
MSH4P40965 MUK1YPL070W 1839 nt3.01□□□□□ -1.93
MSH4P40965 YOR161W-BYOR161W-B 261 nt3.01□□□□□ -1.93
MSH4P40965 CBF2YGR140W 2871 nt3□□□□□ -1.93
MSH4P40965 MRD1YPR112C 2664 nt3□□□□□ -1.93
MSH4P40965 SLH1YGR271W 5904 nt3□□□□□ -1.93
MSH4P40965 VPH1YOR270C 2523 nt2.99□□□□□ -1.93
MSH4P40965 YBL109WYBL109W 336 nt2.99□□□□□ -1.93
MSH4P40965 SGF11YPL047W 300 nt2.99□□□□□ -1.93
MSH4P40965 HOS4YIL112W 3252 nt2.99□□□□□ -1.93
MSH4P40965 COS111YBR203W 2775 nt2.99□□□□□ -1.93
MSH4P40965 ISW1YBR245C 3390 nt2.98□□□□□ -1.93
MSH4P40965 FMP16YDR070C 282 nt2.98□□□□□ -1.93
MSH4P40965 ULI1YFR026C 510 nt2.98□□□□□ -1.93
MSH4P40965 RPL34BYIL052C 366 nt2.98□□□□□ -1.93
MSH4P40965 VPS35YJL154C 2835 nt2.98□□□□□ -1.93
MSH4P40965 NOP53YPL146C 1368 nt2.98□□□□□ -1.93
MSH4P40965 SSQ1YLR369W 1974 nt2.98□□□□□ -1.93
MSH4P40965 ESL2YKR096W 3588 nt2.97□□□□□ -1.93
MSH4P40965 YEL043WYEL043W 2871 nt2.97□□□□□ -1.93
MSH4P40965 PDR1YGL013C 3207 nt2.97□□□□□ -1.93
Retrieved 100 of 7,029 protein–RNA pairs in 75.8 ms