Protein–RNA interactions for Protein: P35249

RFC4, Replication factor C subunit 4, humanhuman

Predictions only

Length 363 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4P35249 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC25.57■■□□□ 1.68
RFC4P35249 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC25.57■■□□□ 1.68
RFC4P35249 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
RFC4P35249 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC25.57■■□□□ 1.68
RFC4P35249 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC25.57■■□□□ 1.68
RFC4P35249 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC25.57■■□□□ 1.68
RFC4P35249 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
RFC4P35249 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC25.56■■□□□ 1.68
RFC4P35249 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
RFC4P35249 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC25.56■■□□□ 1.68
RFC4P35249 CYP2D8P-201ENST00000433633 1490 ntBASIC25.56■■□□□ 1.68
RFC4P35249 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC25.56■■□□□ 1.68
RFC4P35249 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC25.56■■□□□ 1.68
RFC4P35249 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC25.56■■□□□ 1.68
RFC4P35249 AL137013.1-201ENST00000432946 1228 ntBASIC25.56■■□□□ 1.68
RFC4P35249 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC25.56■■□□□ 1.68
RFC4P35249 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC25.56■■□□□ 1.68
RFC4P35249 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC25.56■■□□□ 1.68
RFC4P35249 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC25.56■■□□□ 1.68
RFC4P35249 PALM-207ENST00000590161 2137 ntTSL 4 BASIC25.56■■□□□ 1.68
RFC4P35249 AC011484.1-201ENST00000377652 1995 ntBASIC25.56■■□□□ 1.68
RFC4P35249 KRT18P22-201ENST00000402024 1347 ntBASIC25.56■■□□□ 1.68
RFC4P35249 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
RFC4P35249 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
RFC4P35249 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC25.55■■□□□ 1.68
RFC4P35249 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
RFC4P35249 CRAT-202ENST00000393384 973 ntTSL 2 BASIC25.55■■□□□ 1.68
RFC4P35249 AL390955.1-201ENST00000428694 934 ntBASIC25.55■■□□□ 1.68
RFC4P35249 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
RFC4P35249 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC25.55■■□□□ 1.68
RFC4P35249 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC25.55■■□□□ 1.68
RFC4P35249 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC25.55■■□□□ 1.68
RFC4P35249 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC25.55■■□□□ 1.68
RFC4P35249 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC25.55■■□□□ 1.68
RFC4P35249 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
RFC4P35249 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC25.55■■□□□ 1.68
RFC4P35249 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
RFC4P35249 ME2-208ENST00000638937 2471 ntTSL 5 BASIC25.55■■□□□ 1.68
RFC4P35249 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC25.55■■□□□ 1.68
RFC4P35249 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC25.55■■□□□ 1.68
RFC4P35249 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC25.54■■□□□ 1.68
RFC4P35249 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC25.54■■□□□ 1.68
RFC4P35249 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
RFC4P35249 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC25.54■■□□□ 1.68
RFC4P35249 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC25.54■■□□□ 1.68
RFC4P35249 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC25.54■■□□□ 1.68
RFC4P35249 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
RFC4P35249 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC25.54■■□□□ 1.68
RFC4P35249 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
RFC4P35249 TERF1P1-201ENST00000311003 1181 ntBASIC25.54■■□□□ 1.68
RFC4P35249 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
RFC4P35249 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC25.54■■□□□ 1.68
RFC4P35249 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC25.54■■□□□ 1.68
RFC4P35249 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC25.54■■□□□ 1.68
RFC4P35249 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC25.54■■□□□ 1.68
RFC4P35249 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC25.54■■□□□ 1.68
RFC4P35249 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC25.54■■□□□ 1.68
RFC4P35249 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC25.54■■□□□ 1.68
RFC4P35249 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC25.54■■□□□ 1.68
RFC4P35249 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC25.54■■□□□ 1.68
RFC4P35249 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC25.53■■□□□ 1.68
RFC4P35249 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC25.53■■□□□ 1.68
RFC4P35249 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC25.53■■□□□ 1.68
RFC4P35249 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
RFC4P35249 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
RFC4P35249 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
RFC4P35249 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC25.53■■□□□ 1.68
RFC4P35249 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC25.53■■□□□ 1.68
RFC4P35249 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC25.53■■□□□ 1.68
RFC4P35249 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC25.53■■□□□ 1.68
RFC4P35249 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
RFC4P35249 FITM1-202ENST00000559294 800 ntBASIC25.53■■□□□ 1.68
RFC4P35249 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC25.53■■□□□ 1.68
RFC4P35249 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC25.53■■□□□ 1.68
RFC4P35249 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC25.53■■□□□ 1.68
RFC4P35249 CR392000.1-201ENST00000624770 1228 ntBASIC25.53■■□□□ 1.68
RFC4P35249 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC25.53■■□□□ 1.68
RFC4P35249 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC25.53■■□□□ 1.68
RFC4P35249 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC25.53■■□□□ 1.68
RFC4P35249 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
RFC4P35249 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC25.53■■□□□ 1.68
RFC4P35249 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
RFC4P35249 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
RFC4P35249 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC25.53■■□□□ 1.68
RFC4P35249 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC25.53■■□□□ 1.68
RFC4P35249 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC25.52■■□□□ 1.68
RFC4P35249 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
RFC4P35249 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC25.52■■□□□ 1.68
RFC4P35249 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC25.52■■□□□ 1.68
RFC4P35249 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
RFC4P35249 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC25.52■■□□□ 1.68
RFC4P35249 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
RFC4P35249 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC25.52■■□□□ 1.68
RFC4P35249 AC116562.2-201ENST00000507042 360 ntBASIC25.52■■□□□ 1.68
RFC4P35249 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC25.52■■□□□ 1.68
RFC4P35249 AC010947.1-201ENST00000623454 693 ntBASIC25.52■■□□□ 1.68
RFC4P35249 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
RFC4P35249 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
RFC4P35249 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
RFC4P35249 CASK-201ENST00000378154 2494 ntTSL 5 BASIC25.52■■□□□ 1.68
Retrieved 100 of 98,524 protein–RNA pairs in 21.9 ms