Protein–RNA interactions for Protein: P25846

MSH1, DNA mismatch repair protein MSH1, mitochondrial, yeastyeast

Predictions only

Length 959 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
MSH1P25846 SEF1YBL066C 3447 nt2.3□□□□□ -2.04
MSH1P25846 YDR102CYDR102C 333 nt2.29□□□□□ -2.04
MSH1P25846 YAR053WYAR053W 297 nt2.29□□□□□ -2.04
MSH1P25846 YBL083CYBL083C 426 nt2.29□□□□□ -2.04
MSH1P25846 TOF2YKR010C 2316 nt2.29□□□□□ -2.04
MSH1P25846 VMR1YHL035C 4779 nt2.28□□□□□ -2.04
MSH1P25846 PSY1YKL076C 384 nt2.28□□□□□ -2.04
MSH1P25846 GIP3YPL137C 3831 nt2.27□□□□□ -2.05
MSH1P25846 RTT101YJL047C 2529 nt2.27□□□□□ -2.05
MSH1P25846 YCR043CYCR043C 384 nt2.27□□□□□ -2.05
MSH1P25846 YDL118WYDL118W 381 nt2.27□□□□□ -2.05
MSH1P25846 VTC1YER072W 390 nt2.27□□□□□ -2.05
MSH1P25846 TIM13YGR181W 318 nt2.27□□□□□ -2.05
MSH1P25846 YJL020W-AYJL020W-A 258 nt2.27□□□□□ -2.05
MSH1P25846 YPR010C-AYPR010C-A 219 nt2.27□□□□□ -2.05
MSH1P25846 SLM1YIL105C 2061 nt2.27□□□□□ -2.05
MSH1P25846 YDL062WYDL062W 426 nt2.26□□□□□ -2.05
MSH1P25846 YDR366CYDR366C 399 nt2.26□□□□□ -2.05
MSH1P25846 YFL032WYFL032W 321 nt2.26□□□□□ -2.05
MSH1P25846 RPA34YJL148W 702 nt2.26□□□□□ -2.05
MSH1P25846 RPL26AYLR344W 384 nt2.26□□□□□ -2.05
MSH1P25846 AIM9YER080W 1884 nt2.26□□□□□ -2.05
MSH1P25846 TDA9YML081W 3756 nt2.25□□□□□ -2.05
MSH1P25846 BUD2YKL092C 3315 nt2.25□□□□□ -2.05
MSH1P25846 SNF5YBR289W 2718 nt2.25□□□□□ -2.05
MSH1P25846 YEL057CYEL057C 702 nt2.25□□□□□ -2.05
MSH1P25846 ISF1YMR081C 1017 nt2.25□□□□□ -2.05
MSH1P25846 RPL32YBL092W 393 nt2.25□□□□□ -2.05
MSH1P25846 BIL1YOR304C-A 231 nt2.25□□□□□ -2.05
MSH1P25846 CDC60YPL160W 3273 nt2.25□□□□□ -2.05
MSH1P25846 TOR2YKL203C 7425 nt2.24□□□□□ -2.05
MSH1P25846 DAD4YDR320C-A 219 nt2.24□□□□□ -2.05
MSH1P25846 BRP1YGL007W 378 nt2.24□□□□□ -2.05
MSH1P25846 YKR075W-AYKR075W-A 270 nt2.24□□□□□ -2.05
MSH1P25846 CYB5YNL111C 363 nt2.24□□□□□ -2.05
MSH1P25846 SAP190YKR028W 3102 nt2.24□□□□□ -2.05
MSH1P25846 SYH1YPL105C 2550 nt2.24□□□□□ -2.05
MSH1P25846 BRE1YDL074C 2103 nt2.24□□□□□ -2.05
MSH1P25846 PCF11YDR228C 1881 nt2.24□□□□□ -2.05
MSH1P25846 YDR341CYDR341C 1824 nt2.24□□□□□ -2.05
MSH1P25846 RPS24AYER074W 408 nt2.23□□□□□ -2.05
MSH1P25846 YBL073WYBL073W 312 nt2.23□□□□□ -2.05
MSH1P25846 IRC23YOR044W 474 nt2.23□□□□□ -2.05
MSH1P25846 YOR282WYOR282W 321 nt2.23□□□□□ -2.05
MSH1P25846 snR36snR36 182 nt2.23□□□□□ -2.05
MSH1P25846 ELG1YOR144C 2376 nt2.23□□□□□ -2.05
MSH1P25846 PLC1YPL268W 2610 nt2.22□□□□□ -2.05
MSH1P25846 RPS27AYKL156W 249 nt2.22□□□□□ -2.05
MSH1P25846 YKL183C-AYKL183C-A 213 nt2.22□□□□□ -2.05
MSH1P25846 YMR158W-BYMR158W-B 321 nt2.22□□□□□ -2.05
MSH1P25846 MF(ALPHA)1YPL187W 498 nt2.22□□□□□ -2.05
MSH1P25846 YPL229WYPL229W 621 nt2.22□□□□□ -2.05
MSH1P25846 UBP1YDL122W 2430 nt2.22□□□□□ -2.05
MSH1P25846 RPH1YER169W 2391 nt2.22□□□□□ -2.05
MSH1P25846 snR65snR65 100 nt2.21□□□□□ -2.06
MSH1P25846 RPL37BYDR500C 267 nt2.21□□□□□ -2.06
MSH1P25846 YHR071C-AYHR071C-A 321 nt2.21□□□□□ -2.06
MSH1P25846 YKL083WYKL083W 615 nt2.21□□□□□ -2.06
MSH1P25846 HCH1YNL281W 462 nt2.2□□□□□ -2.06
MSH1P25846 GUP1YGL084C 1683 nt2.2□□□□□ -2.06
MSH1P25846 ALK2YBL009W 2031 nt2.2□□□□□ -2.06
MSH1P25846 RGA1YOR127W 3024 nt2.19□□□□□ -2.06
MSH1P25846 COS111YBR203W 2775 nt2.19□□□□□ -2.06
MSH1P25846 PHS1YJL097W 654 nt2.19□□□□□ -2.06
MSH1P25846 YAR029WYAR029W 225 nt2.19□□□□□ -2.06
MSH1P25846 YNL114CYNL114C 372 nt2.19□□□□□ -2.06
MSH1P25846 DFG16YOR030W 1860 nt2.19□□□□□ -2.06
MSH1P25846 NAM7YMR080C 2916 nt2.19□□□□□ -2.06
MSH1P25846 YBP1YBR216C 2025 nt2.18□□□□□ -2.06
MSH1P25846 ARP7YPR034W 1434 nt2.18□□□□□ -2.06
MSH1P25846 YCR087C-AYCR087C-A 462 nt2.18□□□□□ -2.06
MSH1P25846 YCR102W-AYCR102W-A 198 nt2.18□□□□□ -2.06
MSH1P25846 YGR174W-AYGR174W-A 87 nt2.18□□□□□ -2.06
MSH1P25846 HHT1YBR010W 411 nt2.18□□□□□ -2.06
MSH1P25846 PUT3YKL015W 2940 nt2.18□□□□□ -2.06
MSH1P25846 UTP22YGR090W 3714 nt2.17□□□□□ -2.06
MSH1P25846 RPL42BYHR141C 321 nt2.17□□□□□ -2.06
MSH1P25846 RPL42AYNL162W 321 nt2.17□□□□□ -2.06
MSH1P25846 PEX8YGR077C 1770 nt2.17□□□□□ -2.06
MSH1P25846 STE5YDR103W 2754 nt2.17□□□□□ -2.06
MSH1P25846 CAT2YML042W 2013 nt2.17□□□□□ -2.06
MSH1P25846 ATG9YDL149W 2994 nt2.16□□□□□ -2.06
MSH1P25846 PRE4YFR050C 801 nt2.16□□□□□ -2.06
MSH1P25846 KOG1YHR186C 4674 nt2.16□□□□□ -2.06
MSH1P25846 YIL059CYIL059C 366 nt2.15□□□□□ -2.07
MSH1P25846 ATP7YKL016C 525 nt2.15□□□□□ -2.07
MSH1P25846 AGC1YPR021C 2709 nt2.15□□□□□ -2.07
MSH1P25846 GCN4YEL009C 846 nt2.14□□□□□ -2.07
MSH1P25846 YLR146W-AYLR146W-A 189 nt2.14□□□□□ -2.07
MSH1P25846 YMR290W-AYMR290W-A 348 nt2.14□□□□□ -2.07
MSH1P25846 PET309YLR067C 2898 nt2.14□□□□□ -2.07
MSH1P25846 VPS34YLR240W 2628 nt2.13□□□□□ -2.07
MSH1P25846 CSN9YDR179C 489 nt2.13□□□□□ -2.07
MSH1P25846 YER088C-AYER088C-A 324 nt2.13□□□□□ -2.07
MSH1P25846 YOR072W-AYOR072W-A 249 nt2.13□□□□□ -2.07
MSH1P25846 GCN2YDR283C 4980 nt2.13□□□□□ -2.07
MSH1P25846 SAC3YDR159W 3906 nt2.13□□□□□ -2.07
MSH1P25846 MGA2YIR033W 3342 nt2.12□□□□□ -2.07
MSH1P25846 snR8snR8 190 nt2.12□□□□□ -2.07
MSH1P25846 YDR183C-AYDR183C-A 258 nt2.12□□□□□ -2.07
Retrieved 100 of 7,029 protein–RNA pairs in 10.9 ms