Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
VCANP13611 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
VCANP13611 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
VCANP13611 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC21.07■□□□□ 0.96
VCANP13611 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC21.07■□□□□ 0.96
VCANP13611 AC092647.4-201ENST00000457211 535 ntBASIC21.07■□□□□ 0.96
VCANP13611 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
VCANP13611 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
VCANP13611 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
VCANP13611 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
VCANP13611 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
VCANP13611 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
VCANP13611 MESTP1-201ENST00000404287 994 ntBASIC21.07■□□□□ 0.96
VCANP13611 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC21.07■□□□□ 0.96
VCANP13611 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
VCANP13611 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC21.07■□□□□ 0.96
VCANP13611 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
VCANP13611 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC21.07■□□□□ 0.96
VCANP13611 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
VCANP13611 PKM-204ENST00000449901 2526 ntTSL 2 BASIC21.06■□□□□ 0.96
VCANP13611 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC21.06■□□□□ 0.96
VCANP13611 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC21.06■□□□□ 0.96
VCANP13611 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
VCANP13611 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
VCANP13611 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
VCANP13611 SAPCD2P1-201ENST00000395413 1184 ntBASIC21.06■□□□□ 0.96
VCANP13611 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC21.06■□□□□ 0.96
VCANP13611 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
VCANP13611 AC004264.1-201ENST00000608354 794 ntBASIC21.06■□□□□ 0.96
VCANP13611 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
VCANP13611 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC21.06■□□□□ 0.96
VCANP13611 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
VCANP13611 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC21.06■□□□□ 0.96
VCANP13611 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
VCANP13611 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC21.06■□□□□ 0.96
VCANP13611 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
VCANP13611 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC21.06■□□□□ 0.96
VCANP13611 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
VCANP13611 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
VCANP13611 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
VCANP13611 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC21.05■□□□□ 0.96
VCANP13611 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC21.05■□□□□ 0.96
VCANP13611 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC21.05■□□□□ 0.96
VCANP13611 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC21.05■□□□□ 0.96
VCANP13611 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC21.05■□□□□ 0.96
VCANP13611 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC21.05■□□□□ 0.96
VCANP13611 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
VCANP13611 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC21.05■□□□□ 0.96
VCANP13611 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
VCANP13611 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
VCANP13611 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC21.05■□□□□ 0.96
VCANP13611 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
VCANP13611 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC21.04■□□□□ 0.96
VCANP13611 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
VCANP13611 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC21.04■□□□□ 0.96
VCANP13611 HOTTIP_1.1-201ENST00000620415 57 ntBASIC21.04■□□□□ 0.96
VCANP13611 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
VCANP13611 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC21.04■□□□□ 0.96
VCANP13611 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
VCANP13611 AC079089.2-201ENST00000531211 1277 ntBASIC21.04■□□□□ 0.96
VCANP13611 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
VCANP13611 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC21.03■□□□□ 0.96
VCANP13611 SKP2-204ENST00000508514 821 ntTSL 3 BASIC21.03■□□□□ 0.96
VCANP13611 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC21.03■□□□□ 0.96
VCANP13611 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
VCANP13611 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC21.03■□□□□ 0.96
VCANP13611 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
VCANP13611 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
VCANP13611 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC21.03■□□□□ 0.96
VCANP13611 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
VCANP13611 KRT16P1-201ENST00000399124 1418 ntBASIC21.03■□□□□ 0.96
VCANP13611 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
VCANP13611 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC21.03■□□□□ 0.96
VCANP13611 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC21.03■□□□□ 0.96
VCANP13611 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
VCANP13611 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
VCANP13611 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC21.03■□□□□ 0.96
VCANP13611 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC21.03■□□□□ 0.96
VCANP13611 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC21.03■□□□□ 0.96
VCANP13611 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
VCANP13611 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
VCANP13611 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
VCANP13611 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
VCANP13611 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
VCANP13611 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC21.02■□□□□ 0.96
VCANP13611 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC21.02■□□□□ 0.96
VCANP13611 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC21.02■□□□□ 0.96
VCANP13611 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC21.02■□□□□ 0.96
VCANP13611 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
VCANP13611 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
VCANP13611 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
VCANP13611 AC093323.1-202ENST00000635031 2045 ntBASIC21.02■□□□□ 0.96
VCANP13611 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.96
VCANP13611 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC21.02■□□□□ 0.96
VCANP13611 CKBP1-201ENST00000565489 1086 ntBASIC21.02■□□□□ 0.96
VCANP13611 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC21.02■□□□□ 0.96
VCANP13611 AC011558.1-201ENST00000623459 338 ntBASIC21.02■□□□□ 0.96
VCANP13611 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
VCANP13611 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
VCANP13611 COMT-203ENST00000403184 2217 ntTSL 2 BASIC21.02■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms