Protein–RNA interactions for Protein: P08572

COL4A2, Collagen alpha-2(IV) chain, humanhuman

Predictions only

Length 1,712 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A2P08572 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
COL4A2P08572 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC20.57■□□□□ 0.88
COL4A2P08572 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC20.57■□□□□ 0.88
COL4A2P08572 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
COL4A2P08572 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
COL4A2P08572 TUB-203ENST00000534099 1759 ntTSL 2 BASIC20.57■□□□□ 0.88
COL4A2P08572 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
COL4A2P08572 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC20.57■□□□□ 0.88
COL4A2P08572 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
COL4A2P08572 GALC-202ENST00000393568 2054 ntTSL 2 BASIC20.56■□□□□ 0.88
COL4A2P08572 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
COL4A2P08572 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
COL4A2P08572 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC20.56■□□□□ 0.88
COL4A2P08572 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC20.56■□□□□ 0.88
COL4A2P08572 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC20.56■□□□□ 0.88
COL4A2P08572 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC20.56■□□□□ 0.88
COL4A2P08572 AL031963.3-201ENST00000606441 850 ntBASIC20.56■□□□□ 0.88
COL4A2P08572 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC20.56■□□□□ 0.88
COL4A2P08572 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
COL4A2P08572 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
COL4A2P08572 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
COL4A2P08572 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
COL4A2P08572 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
COL4A2P08572 AC011484.1-201ENST00000377652 1995 ntBASIC20.56■□□□□ 0.88
COL4A2P08572 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC20.56■□□□□ 0.88
COL4A2P08572 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
COL4A2P08572 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC20.56■□□□□ 0.88
COL4A2P08572 UNC93B2-201ENST00000285383 730 ntBASIC20.56■□□□□ 0.88
COL4A2P08572 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
COL4A2P08572 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
COL4A2P08572 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
COL4A2P08572 AL355355.2-201ENST00000442321 338 ntBASIC20.56■□□□□ 0.88
COL4A2P08572 PNN-205ENST00000556530 601 ntTSL 2 BASIC20.56■□□□□ 0.88
COL4A2P08572 AP000525.1-201ENST00000608286 694 ntBASIC20.56■□□□□ 0.88
COL4A2P08572 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC20.56■□□□□ 0.88
COL4A2P08572 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
COL4A2P08572 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC20.55■□□□□ 0.88
COL4A2P08572 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
COL4A2P08572 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
COL4A2P08572 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC20.55■□□□□ 0.88
COL4A2P08572 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC20.55■□□□□ 0.88
COL4A2P08572 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
COL4A2P08572 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC20.55■□□□□ 0.88
COL4A2P08572 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC20.55■□□□□ 0.88
COL4A2P08572 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC20.55■□□□□ 0.88
COL4A2P08572 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
COL4A2P08572 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC20.55■□□□□ 0.88
COL4A2P08572 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
COL4A2P08572 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC20.55■□□□□ 0.88
COL4A2P08572 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
COL4A2P08572 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
COL4A2P08572 AC027702.1-201ENST00000563810 1770 ntBASIC20.55■□□□□ 0.88
COL4A2P08572 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
COL4A2P08572 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
COL4A2P08572 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
COL4A2P08572 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
COL4A2P08572 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
COL4A2P08572 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC20.54■□□□□ 0.88
COL4A2P08572 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC20.54■□□□□ 0.88
COL4A2P08572 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC20.54■□□□□ 0.88
COL4A2P08572 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
COL4A2P08572 AC116562.2-201ENST00000507042 360 ntBASIC20.54■□□□□ 0.88
COL4A2P08572 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC20.54■□□□□ 0.88
COL4A2P08572 AC073195.1-201ENST00000607241 877 ntBASIC20.54■□□□□ 0.88
COL4A2P08572 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
COL4A2P08572 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
COL4A2P08572 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC20.54■□□□□ 0.88
COL4A2P08572 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
COL4A2P08572 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC20.54■□□□□ 0.88
COL4A2P08572 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
COL4A2P08572 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC20.53■□□□□ 0.88
COL4A2P08572 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
COL4A2P08572 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
COL4A2P08572 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC20.53■□□□□ 0.88
COL4A2P08572 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
COL4A2P08572 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
COL4A2P08572 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
COL4A2P08572 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC20.53■□□□□ 0.88
COL4A2P08572 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC20.53■□□□□ 0.88
COL4A2P08572 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
COL4A2P08572 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC20.53■□□□□ 0.88
COL4A2P08572 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC20.53■□□□□ 0.88
COL4A2P08572 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC20.53■□□□□ 0.88
COL4A2P08572 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
COL4A2P08572 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
COL4A2P08572 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
COL4A2P08572 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
COL4A2P08572 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC20.53■□□□□ 0.88
COL4A2P08572 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
COL4A2P08572 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC20.53■□□□□ 0.88
COL4A2P08572 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
COL4A2P08572 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
COL4A2P08572 KRT16P1-201ENST00000399124 1418 ntBASIC20.53■□□□□ 0.88
COL4A2P08572 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
COL4A2P08572 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC20.53■□□□□ 0.88
COL4A2P08572 GLDC-219ENST00000640208 420 ntTSL 2 BASIC20.53■□□□□ 0.88
COL4A2P08572 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC20.53■□□□□ 0.88
COL4A2P08572 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
COL4A2P08572 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
COL4A2P08572 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 23.7 ms