Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC21.17■□□□□ 0.98
APOEP02649 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
APOEP02649 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
APOEP02649 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC21.17■□□□□ 0.98
APOEP02649 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
APOEP02649 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC21.17■□□□□ 0.98
APOEP02649 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
APOEP02649 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC21.17■□□□□ 0.98
APOEP02649 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
APOEP02649 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
APOEP02649 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
APOEP02649 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
APOEP02649 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
APOEP02649 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
APOEP02649 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
APOEP02649 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC21.16■□□□□ 0.98
APOEP02649 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
APOEP02649 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
APOEP02649 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
APOEP02649 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC21.16■□□□□ 0.98
APOEP02649 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC21.16■□□□□ 0.98
APOEP02649 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
APOEP02649 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
APOEP02649 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
APOEP02649 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
APOEP02649 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
APOEP02649 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
APOEP02649 OR2A1-AS1-201ENST00000462305 773 ntBASIC21.16■□□□□ 0.98
APOEP02649 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC21.16■□□□□ 0.98
APOEP02649 AC091874.3-201ENST00000512672 1195 ntBASIC21.16■□□□□ 0.98
APOEP02649 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
APOEP02649 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
APOEP02649 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
APOEP02649 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC21.15■□□□□ 0.98
APOEP02649 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC21.15■□□□□ 0.98
APOEP02649 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
APOEP02649 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC21.15■□□□□ 0.98
APOEP02649 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
APOEP02649 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
APOEP02649 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
APOEP02649 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
APOEP02649 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC21.15■□□□□ 0.98
APOEP02649 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
APOEP02649 RHEB-204ENST00000472642 900 ntTSL 3 BASIC21.15■□□□□ 0.98
APOEP02649 AC097658.1-201ENST00000475555 843 ntBASIC21.15■□□□□ 0.98
APOEP02649 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC21.15■□□□□ 0.98
APOEP02649 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC21.15■□□□□ 0.98
APOEP02649 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
APOEP02649 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
APOEP02649 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
APOEP02649 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
APOEP02649 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
APOEP02649 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC21.15■□□□□ 0.98
APOEP02649 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
APOEP02649 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
APOEP02649 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
APOEP02649 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
APOEP02649 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC21.15■□□□□ 0.98
APOEP02649 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
APOEP02649 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
APOEP02649 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
APOEP02649 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
APOEP02649 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC21.14■□□□□ 0.98
APOEP02649 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
APOEP02649 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.98
APOEP02649 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.98
APOEP02649 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
APOEP02649 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
APOEP02649 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC21.14■□□□□ 0.97
APOEP02649 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
APOEP02649 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC21.14■□□□□ 0.97
APOEP02649 BET1L-207ENST00000529614 560 ntTSL 5 BASIC21.14■□□□□ 0.97
APOEP02649 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.97
APOEP02649 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
APOEP02649 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC21.14■□□□□ 0.97
APOEP02649 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
APOEP02649 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
APOEP02649 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC21.13■□□□□ 0.97
APOEP02649 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC21.13■□□□□ 0.97
APOEP02649 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
APOEP02649 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
APOEP02649 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
APOEP02649 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
APOEP02649 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
APOEP02649 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
APOEP02649 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC21.13■□□□□ 0.97
APOEP02649 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
APOEP02649 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC21.13■□□□□ 0.97
APOEP02649 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
APOEP02649 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC21.13■□□□□ 0.97
APOEP02649 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
APOEP02649 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
APOEP02649 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
APOEP02649 ME2-216ENST00000639850 2331 ntTSL 5 BASIC21.12■□□□□ 0.97
APOEP02649 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
APOEP02649 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
APOEP02649 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
APOEP02649 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
APOEP02649 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
APOEP02649 NXN-202ENST00000537628 1340 ntTSL 3 BASIC21.12■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 20.7 ms