Protein–RNA interactions for Protein: P02458

COL2A1, Collagen alpha-1(II) chain, humanhuman

Predicted RBP Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1P02458 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
COL2A1P02458 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC23.81■■□□□ 1.4
COL2A1P02458 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC23.81■■□□□ 1.4
COL2A1P02458 FEM1AP4-201ENST00000443167 1987 ntBASIC23.81■■□□□ 1.4
COL2A1P02458 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
COL2A1P02458 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
COL2A1P02458 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
COL2A1P02458 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
COL2A1P02458 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC23.81■■□□□ 1.4
COL2A1P02458 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
COL2A1P02458 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC23.81■■□□□ 1.4
COL2A1P02458 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC23.81■■□□□ 1.4
COL2A1P02458 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC23.81■■□□□ 1.4
COL2A1P02458 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC23.81■■□□□ 1.4
COL2A1P02458 SNX21-213ENST00000614929 587 ntTSL 5 BASIC23.81■■□□□ 1.4
COL2A1P02458 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC23.8■■□□□ 1.4
COL2A1P02458 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
COL2A1P02458 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC23.8■■□□□ 1.4
COL2A1P02458 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
COL2A1P02458 KRT17P2-201ENST00000300992 1314 ntBASIC23.8■■□□□ 1.4
COL2A1P02458 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC23.8■■□□□ 1.4
COL2A1P02458 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC23.8■■□□□ 1.4
COL2A1P02458 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC23.8■■□□□ 1.4
COL2A1P02458 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC23.8■■□□□ 1.4
COL2A1P02458 PENK-204ENST00000518770 863 ntTSL 2 BASIC23.8■■□□□ 1.4
COL2A1P02458 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC23.8■■□□□ 1.4
COL2A1P02458 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
COL2A1P02458 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
COL2A1P02458 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC23.8■■□□□ 1.4
COL2A1P02458 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
COL2A1P02458 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
COL2A1P02458 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
COL2A1P02458 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC23.79■■□□□ 1.4
COL2A1P02458 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC23.79■■□□□ 1.4
COL2A1P02458 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
COL2A1P02458 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
COL2A1P02458 AL353807.1-201ENST00000427475 662 ntBASIC23.79■■□□□ 1.4
COL2A1P02458 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC23.79■■□□□ 1.4
COL2A1P02458 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC23.79■■□□□ 1.4
COL2A1P02458 GRAP-204ENST00000573099 846 ntTSL 3 BASIC23.79■■□□□ 1.4
COL2A1P02458 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC23.79■■□□□ 1.4
COL2A1P02458 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC23.79■■□□□ 1.4
COL2A1P02458 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC23.79■■□□□ 1.4
COL2A1P02458 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC23.78■■□□□ 1.4
COL2A1P02458 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC23.78■■□□□ 1.4
COL2A1P02458 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC23.78■■□□□ 1.4
COL2A1P02458 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC23.78■■□□□ 1.4
COL2A1P02458 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
COL2A1P02458 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
COL2A1P02458 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
COL2A1P02458 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC23.78■■□□□ 1.4
COL2A1P02458 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
COL2A1P02458 NBPF21P-201ENST00000425093 1451 ntBASIC23.78■■□□□ 1.4
COL2A1P02458 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC23.78■■□□□ 1.4
COL2A1P02458 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
COL2A1P02458 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC23.77■■□□□ 1.4
COL2A1P02458 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC23.77■■□□□ 1.4
COL2A1P02458 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC23.77■■□□□ 1.4
COL2A1P02458 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
COL2A1P02458 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC23.77■■□□□ 1.4
COL2A1P02458 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC23.77■■□□□ 1.4
COL2A1P02458 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC23.77■■□□□ 1.4
COL2A1P02458 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC23.77■■□□□ 1.4
COL2A1P02458 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC23.77■■□□□ 1.4
COL2A1P02458 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC23.77■■□□□ 1.4
COL2A1P02458 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC23.77■■□□□ 1.4
COL2A1P02458 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
COL2A1P02458 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
COL2A1P02458 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC23.77■■□□□ 1.4
COL2A1P02458 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
COL2A1P02458 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
COL2A1P02458 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC23.77■■□□□ 1.4
COL2A1P02458 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC23.77■■□□□ 1.4
COL2A1P02458 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
COL2A1P02458 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
COL2A1P02458 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
COL2A1P02458 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
COL2A1P02458 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC23.76■■□□□ 1.39
COL2A1P02458 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC23.76■■□□□ 1.39
COL2A1P02458 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC23.76■■□□□ 1.39
COL2A1P02458 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC23.76■■□□□ 1.39
COL2A1P02458 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC23.76■■□□□ 1.39
COL2A1P02458 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC23.76■■□□□ 1.39
COL2A1P02458 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC23.76■■□□□ 1.39
COL2A1P02458 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
COL2A1P02458 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
COL2A1P02458 HLA-G-202ENST00000376815 851 ntBASIC23.75■■□□□ 1.39
COL2A1P02458 HLA-G-203ENST00000376818 1127 ntBASIC23.75■■□□□ 1.39
COL2A1P02458 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC23.75■■□□□ 1.39
COL2A1P02458 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC23.75■■□□□ 1.39
COL2A1P02458 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC23.75■■□□□ 1.39
COL2A1P02458 AL355075.4-201ENST00000554988 638 ntBASIC23.75■■□□□ 1.39
COL2A1P02458 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC23.75■■□□□ 1.39
COL2A1P02458 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC23.75■■□□□ 1.39
COL2A1P02458 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC23.75■■□□□ 1.39
COL2A1P02458 KRT8P20-201ENST00000423953 1409 ntBASIC23.75■■□□□ 1.39
COL2A1P02458 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
COL2A1P02458 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC23.75■■□□□ 1.39
COL2A1P02458 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
COL2A1P02458 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC23.75■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 18.8 ms