Protein–RNA interactions for Protein: O95639

CPSF4, Cleavage and polyadenylation specificity factor subunit 4, humanhuman

Known RBP Predictions only

Length 269 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4O95639 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
CPSF4O95639 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CPSF4O95639 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CPSF4O95639 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
CPSF4O95639 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
CPSF4O95639 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CPSF4O95639 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC19.21■□□□□ 0.67
CPSF4O95639 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC19.21■□□□□ 0.67
CPSF4O95639 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
CPSF4O95639 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CPSF4O95639 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC19.21■□□□□ 0.67
CPSF4O95639 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CPSF4O95639 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC19.21■□□□□ 0.67
CPSF4O95639 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC19.21■□□□□ 0.67
CPSF4O95639 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC19.21■□□□□ 0.67
CPSF4O95639 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CPSF4O95639 GALNS-213ENST00000569433 723 ntTSL 3 BASIC19.21■□□□□ 0.67
CPSF4O95639 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC19.21■□□□□ 0.67
CPSF4O95639 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC19.21■□□□□ 0.67
CPSF4O95639 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC19.21■□□□□ 0.67
CPSF4O95639 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
CPSF4O95639 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CPSF4O95639 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC19.21■□□□□ 0.67
CPSF4O95639 AC019069.1-201ENST00000610008 1333 ntBASIC19.21■□□□□ 0.67
CPSF4O95639 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
CPSF4O95639 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CPSF4O95639 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CPSF4O95639 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC19.2■□□□□ 0.66
CPSF4O95639 TCF3P1-201ENST00000423021 1937 ntBASIC19.2■□□□□ 0.66
CPSF4O95639 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CPSF4O95639 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC19.2■□□□□ 0.66
CPSF4O95639 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC19.2■□□□□ 0.66
CPSF4O95639 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC19.2■□□□□ 0.66
CPSF4O95639 SLC7A5P1-201ENST00000568957 537 ntBASIC19.2■□□□□ 0.66
CPSF4O95639 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CPSF4O95639 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC19.2■□□□□ 0.66
CPSF4O95639 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC19.2■□□□□ 0.66
CPSF4O95639 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC19.2■□□□□ 0.66
CPSF4O95639 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
CPSF4O95639 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CPSF4O95639 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
CPSF4O95639 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CPSF4O95639 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CPSF4O95639 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC19.19■□□□□ 0.66
CPSF4O95639 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CPSF4O95639 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC19.19■□□□□ 0.66
CPSF4O95639 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CPSF4O95639 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CPSF4O95639 KRT19P1-201ENST00000405746 1186 ntBASIC19.19■□□□□ 0.66
CPSF4O95639 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
CPSF4O95639 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
CPSF4O95639 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
CPSF4O95639 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC19.19■□□□□ 0.66
CPSF4O95639 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
CPSF4O95639 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CPSF4O95639 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC19.19■□□□□ 0.66
CPSF4O95639 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
CPSF4O95639 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CPSF4O95639 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CPSF4O95639 KRT8P36-201ENST00000489121 1440 ntBASIC19.18■□□□□ 0.66
CPSF4O95639 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC19.18■□□□□ 0.66
CPSF4O95639 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
CPSF4O95639 DPP3P2-201ENST00000416030 1696 ntBASIC19.18■□□□□ 0.66
CPSF4O95639 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CPSF4O95639 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC19.18■□□□□ 0.66
CPSF4O95639 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
CPSF4O95639 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CPSF4O95639 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CPSF4O95639 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CPSF4O95639 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CPSF4O95639 UBE2DNL-204ENST00000602536 740 ntBASIC19.18■□□□□ 0.66
CPSF4O95639 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC19.18■□□□□ 0.66
CPSF4O95639 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CPSF4O95639 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CPSF4O95639 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
CPSF4O95639 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CPSF4O95639 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
CPSF4O95639 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CPSF4O95639 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CPSF4O95639 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CPSF4O95639 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CPSF4O95639 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CPSF4O95639 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
CPSF4O95639 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC19.17■□□□□ 0.66
CPSF4O95639 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CPSF4O95639 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CPSF4O95639 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC19.17■□□□□ 0.66
CPSF4O95639 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
CPSF4O95639 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC19.17■□□□□ 0.66
CPSF4O95639 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CPSF4O95639 GUK1-205ENST00000366722 850 ntTSL 3 BASIC19.17■□□□□ 0.66
CPSF4O95639 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CPSF4O95639 CDV3P1-201ENST00000471403 739 ntBASIC19.17■□□□□ 0.66
CPSF4O95639 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CPSF4O95639 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC19.17■□□□□ 0.66
CPSF4O95639 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC19.17■□□□□ 0.66
CPSF4O95639 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC19.17■□□□□ 0.66
CPSF4O95639 KRT18P61-201ENST00000585825 1298 ntBASIC19.17■□□□□ 0.66
CPSF4O95639 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CPSF4O95639 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 22.8 ms