Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
HMGN4O00479 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
HMGN4O00479 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC18.82■□□□□ 0.6
HMGN4O00479 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC18.82■□□□□ 0.6
HMGN4O00479 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
HMGN4O00479 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
HMGN4O00479 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
HMGN4O00479 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
HMGN4O00479 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC18.82■□□□□ 0.6
HMGN4O00479 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
HMGN4O00479 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
HMGN4O00479 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
HMGN4O00479 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC18.82■□□□□ 0.6
HMGN4O00479 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC18.82■□□□□ 0.6
HMGN4O00479 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
HMGN4O00479 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
HMGN4O00479 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC18.82■□□□□ 0.6
HMGN4O00479 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
HMGN4O00479 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
HMGN4O00479 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
HMGN4O00479 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC18.81■□□□□ 0.6
HMGN4O00479 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
HMGN4O00479 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
HMGN4O00479 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
HMGN4O00479 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
HMGN4O00479 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC18.81■□□□□ 0.6
HMGN4O00479 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
HMGN4O00479 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
HMGN4O00479 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
HMGN4O00479 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
HMGN4O00479 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
HMGN4O00479 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC18.81■□□□□ 0.6
HMGN4O00479 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC18.81■□□□□ 0.6
HMGN4O00479 RARRES2P6-201ENST00000567333 442 ntBASIC18.81■□□□□ 0.6
HMGN4O00479 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
HMGN4O00479 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
HMGN4O00479 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC18.81■□□□□ 0.6
HMGN4O00479 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC18.81■□□□□ 0.6
HMGN4O00479 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC18.81■□□□□ 0.6
HMGN4O00479 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
HMGN4O00479 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
HMGN4O00479 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC18.81■□□□□ 0.6
HMGN4O00479 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC18.81■□□□□ 0.6
HMGN4O00479 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC18.81■□□□□ 0.6
HMGN4O00479 H19-201ENST00000411754 1788 ntTSL 5 BASIC18.81■□□□□ 0.6
HMGN4O00479 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
HMGN4O00479 STK25-205ENST00000405883 1904 ntTSL 2 BASIC18.8■□□□□ 0.6
HMGN4O00479 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC18.8■□□□□ 0.6
HMGN4O00479 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
HMGN4O00479 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
HMGN4O00479 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
HMGN4O00479 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC18.8■□□□□ 0.6
HMGN4O00479 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC18.8■□□□□ 0.6
HMGN4O00479 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
HMGN4O00479 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
HMGN4O00479 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
HMGN4O00479 AC016769.1-201ENST00000409132 1010 ntBASIC18.8■□□□□ 0.6
HMGN4O00479 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC18.8■□□□□ 0.6
HMGN4O00479 CNN2P6-201ENST00000439038 900 ntBASIC18.8■□□□□ 0.6
HMGN4O00479 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
HMGN4O00479 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC18.8■□□□□ 0.6
HMGN4O00479 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC18.8■□□□□ 0.6
HMGN4O00479 DUX4L16-201ENST00000555130 1264 ntBASIC18.8■□□□□ 0.6
HMGN4O00479 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC18.8■□□□□ 0.6
HMGN4O00479 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
HMGN4O00479 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC18.8■□□□□ 0.6
HMGN4O00479 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
HMGN4O00479 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC18.8■□□□□ 0.6
HMGN4O00479 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
HMGN4O00479 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC18.8■□□□□ 0.6
HMGN4O00479 BX119927.1-201ENST00000636596 1552 ntBASIC18.8■□□□□ 0.6
HMGN4O00479 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
HMGN4O00479 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC18.8■□□□□ 0.6
HMGN4O00479 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
HMGN4O00479 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
HMGN4O00479 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
HMGN4O00479 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC18.79■□□□□ 0.6
HMGN4O00479 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
HMGN4O00479 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC18.79■□□□□ 0.6
HMGN4O00479 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
HMGN4O00479 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
HMGN4O00479 LBX2-AS1-202ENST00000603175 2083 ntBASIC18.79■□□□□ 0.6
HMGN4O00479 AC006015.1-201ENST00000429970 570 ntBASIC18.79■□□□□ 0.6
HMGN4O00479 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC18.79■□□□□ 0.6
HMGN4O00479 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC18.79■□□□□ 0.6
HMGN4O00479 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
HMGN4O00479 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
HMGN4O00479 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
HMGN4O00479 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC18.79■□□□□ 0.6
HMGN4O00479 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC18.79■□□□□ 0.6
HMGN4O00479 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
HMGN4O00479 AL691432.2-201ENST00000607222 2038 ntBASIC18.79■□□□□ 0.6
HMGN4O00479 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
HMGN4O00479 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
HMGN4O00479 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC18.79■□□□□ 0.6
HMGN4O00479 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
HMGN4O00479 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
HMGN4O00479 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
HMGN4O00479 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
HMGN4O00479 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC18.78■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 23.9 ms