Protein–RNA interactions for Protein: O00322

UPK1A, Uroplakin-1a, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPK1AO00322 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
UPK1AO00322 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
UPK1AO00322 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
UPK1AO00322 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
UPK1AO00322 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC19.17■□□□□ 0.66
UPK1AO00322 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
UPK1AO00322 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
UPK1AO00322 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
UPK1AO00322 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC19.17■□□□□ 0.66
UPK1AO00322 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC19.17■□□□□ 0.66
UPK1AO00322 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
UPK1AO00322 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC19.17■□□□□ 0.66
UPK1AO00322 AC022517.1-201ENST00000592429 346 ntBASIC19.17■□□□□ 0.66
UPK1AO00322 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC19.17■□□□□ 0.66
UPK1AO00322 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
UPK1AO00322 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
UPK1AO00322 AC116562.4-201ENST00000641316 2276 ntBASIC19.17■□□□□ 0.66
UPK1AO00322 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC19.17■□□□□ 0.66
UPK1AO00322 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC19.17■□□□□ 0.66
UPK1AO00322 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
UPK1AO00322 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
UPK1AO00322 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC19.16■□□□□ 0.66
UPK1AO00322 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
UPK1AO00322 AC125437.2-201ENST00000625180 2167 ntBASIC19.16■□□□□ 0.66
UPK1AO00322 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
UPK1AO00322 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC19.16■□□□□ 0.66
UPK1AO00322 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
UPK1AO00322 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
UPK1AO00322 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
UPK1AO00322 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
UPK1AO00322 SAPCD2P1-201ENST00000395413 1184 ntBASIC19.16■□□□□ 0.66
UPK1AO00322 BMP1-204ENST00000397814 836 ntTSL 4 BASIC19.16■□□□□ 0.66
UPK1AO00322 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
UPK1AO00322 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
UPK1AO00322 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
UPK1AO00322 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC19.16■□□□□ 0.66
UPK1AO00322 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC19.16■□□□□ 0.66
UPK1AO00322 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC19.16■□□□□ 0.66
UPK1AO00322 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
UPK1AO00322 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC19.16■□□□□ 0.66
UPK1AO00322 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC19.16■□□□□ 0.66
UPK1AO00322 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
UPK1AO00322 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
UPK1AO00322 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC19.16■□□□□ 0.66
UPK1AO00322 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC19.16■□□□□ 0.66
UPK1AO00322 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
UPK1AO00322 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
UPK1AO00322 AC018445.3-201ENST00000624177 1945 ntBASIC19.15■□□□□ 0.66
UPK1AO00322 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
UPK1AO00322 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
UPK1AO00322 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC19.15■□□□□ 0.66
UPK1AO00322 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC19.15■□□□□ 0.66
UPK1AO00322 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC19.15■□□□□ 0.66
UPK1AO00322 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
UPK1AO00322 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
UPK1AO00322 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC19.15■□□□□ 0.66
UPK1AO00322 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC19.15■□□□□ 0.66
UPK1AO00322 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
UPK1AO00322 CDV3P1-201ENST00000471403 739 ntBASIC19.15■□□□□ 0.66
UPK1AO00322 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC19.15■□□□□ 0.66
UPK1AO00322 DUX4L16-201ENST00000555130 1264 ntBASIC19.15■□□□□ 0.66
UPK1AO00322 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC19.15■□□□□ 0.66
UPK1AO00322 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC19.15■□□□□ 0.66
UPK1AO00322 AL591742.1-201ENST00000604433 565 ntBASIC19.15■□□□□ 0.66
UPK1AO00322 AC011767.1-201ENST00000617410 1153 ntBASIC19.15■□□□□ 0.66
UPK1AO00322 AC013268.1-206ENST00000638368 961 ntBASIC19.15■□□□□ 0.66
UPK1AO00322 AC112229.1-201ENST00000639295 961 ntBASIC19.15■□□□□ 0.66
UPK1AO00322 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC19.15■□□□□ 0.66
UPK1AO00322 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
UPK1AO00322 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
UPK1AO00322 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
UPK1AO00322 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC19.15■□□□□ 0.66
UPK1AO00322 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
UPK1AO00322 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
UPK1AO00322 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC19.15■□□□□ 0.66
UPK1AO00322 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC19.15■□□□□ 0.66
UPK1AO00322 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
UPK1AO00322 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
UPK1AO00322 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC19.14■□□□□ 0.66
UPK1AO00322 AC098818.2-201ENST00000564925 2320 ntBASIC19.14■□□□□ 0.66
UPK1AO00322 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
UPK1AO00322 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC19.14■□□□□ 0.66
UPK1AO00322 BX323043.1-201ENST00000641006 1765 ntBASIC19.14■□□□□ 0.66
UPK1AO00322 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
UPK1AO00322 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
UPK1AO00322 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
UPK1AO00322 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
UPK1AO00322 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC19.14■□□□□ 0.65
UPK1AO00322 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC19.14■□□□□ 0.65
UPK1AO00322 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC19.14■□□□□ 0.65
UPK1AO00322 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC19.14■□□□□ 0.65
UPK1AO00322 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC19.14■□□□□ 0.65
UPK1AO00322 AC007322.4-201ENST00000509611 723 ntBASIC19.14■□□□□ 0.65
UPK1AO00322 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC19.14■□□□□ 0.65
UPK1AO00322 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC19.14■□□□□ 0.65
UPK1AO00322 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC19.14■□□□□ 0.65
UPK1AO00322 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
UPK1AO00322 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
UPK1AO00322 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
UPK1AO00322 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC19.14■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms