Protein–RNA interactions for Protein: A0A539

TCRBV7S3A2, T-cell receptor beta variable 4-2 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV7S3A2A0A539 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
TCRBV7S3A2A0A539 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
TCRBV7S3A2A0A539 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
TCRBV7S3A2A0A539 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC20.57■□□□□ 0.88
TCRBV7S3A2A0A539 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC20.57■□□□□ 0.88
TCRBV7S3A2A0A539 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC20.57■□□□□ 0.88
TCRBV7S3A2A0A539 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
TCRBV7S3A2A0A539 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC20.57■□□□□ 0.88
TCRBV7S3A2A0A539 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
TCRBV7S3A2A0A539 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
TCRBV7S3A2A0A539 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
TCRBV7S3A2A0A539 TERF1P5-201ENST00000477545 1207 ntBASIC20.57■□□□□ 0.88
TCRBV7S3A2A0A539 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC20.57■□□□□ 0.88
TCRBV7S3A2A0A539 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC20.57■□□□□ 0.88
TCRBV7S3A2A0A539 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC20.57■□□□□ 0.88
TCRBV7S3A2A0A539 AC010536.3-201ENST00000620306 533 ntBASIC20.57■□□□□ 0.88
TCRBV7S3A2A0A539 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
TCRBV7S3A2A0A539 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
TCRBV7S3A2A0A539 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC20.56■□□□□ 0.88
TCRBV7S3A2A0A539 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
TCRBV7S3A2A0A539 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
TCRBV7S3A2A0A539 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
TCRBV7S3A2A0A539 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC20.56■□□□□ 0.88
TCRBV7S3A2A0A539 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC20.56■□□□□ 0.88
TCRBV7S3A2A0A539 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC20.56■□□□□ 0.88
TCRBV7S3A2A0A539 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC20.56■□□□□ 0.88
TCRBV7S3A2A0A539 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
TCRBV7S3A2A0A539 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC20.56■□□□□ 0.88
TCRBV7S3A2A0A539 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
TCRBV7S3A2A0A539 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
TCRBV7S3A2A0A539 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
TCRBV7S3A2A0A539 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
TCRBV7S3A2A0A539 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
TCRBV7S3A2A0A539 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
TCRBV7S3A2A0A539 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC20.56■□□□□ 0.88
TCRBV7S3A2A0A539 AC087623.3-201ENST00000607047 1098 ntBASIC20.56■□□□□ 0.88
TCRBV7S3A2A0A539 AC016405.3-201ENST00000607710 860 ntBASIC20.56■□□□□ 0.88
TCRBV7S3A2A0A539 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
TCRBV7S3A2A0A539 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
TCRBV7S3A2A0A539 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
TCRBV7S3A2A0A539 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
TCRBV7S3A2A0A539 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC20.56■□□□□ 0.88
TCRBV7S3A2A0A539 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
TCRBV7S3A2A0A539 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
TCRBV7S3A2A0A539 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
TCRBV7S3A2A0A539 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
TCRBV7S3A2A0A539 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
TCRBV7S3A2A0A539 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
TCRBV7S3A2A0A539 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
TCRBV7S3A2A0A539 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
TCRBV7S3A2A0A539 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
TCRBV7S3A2A0A539 BX119927.1-201ENST00000636596 1552 ntBASIC20.55■□□□□ 0.88
TCRBV7S3A2A0A539 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
TCRBV7S3A2A0A539 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC20.55■□□□□ 0.88
TCRBV7S3A2A0A539 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC20.55■□□□□ 0.88
TCRBV7S3A2A0A539 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
TCRBV7S3A2A0A539 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
TCRBV7S3A2A0A539 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC20.55■□□□□ 0.88
TCRBV7S3A2A0A539 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
TCRBV7S3A2A0A539 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
TCRBV7S3A2A0A539 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
TCRBV7S3A2A0A539 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
TCRBV7S3A2A0A539 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
TCRBV7S3A2A0A539 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
TCRBV7S3A2A0A539 STX7-201ENST00000367937 1090 ntTSL 5 BASIC20.55■□□□□ 0.88
TCRBV7S3A2A0A539 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC20.55■□□□□ 0.88
TCRBV7S3A2A0A539 AC097381.1-201ENST00000429019 1296 ntBASIC20.55■□□□□ 0.88
TCRBV7S3A2A0A539 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC20.55■□□□□ 0.88
TCRBV7S3A2A0A539 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC20.55■□□□□ 0.88
TCRBV7S3A2A0A539 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC20.55■□□□□ 0.88
TCRBV7S3A2A0A539 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
TCRBV7S3A2A0A539 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
TCRBV7S3A2A0A539 STK25-205ENST00000405883 1904 ntTSL 2 BASIC20.55■□□□□ 0.88
TCRBV7S3A2A0A539 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
TCRBV7S3A2A0A539 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TCRBV7S3A2A0A539 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC20.54■□□□□ 0.88
TCRBV7S3A2A0A539 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
TCRBV7S3A2A0A539 AC034268.1-201ENST00000441047 882 ntBASIC20.54■□□□□ 0.88
TCRBV7S3A2A0A539 DBI-210ENST00000542275 757 ntTSL 5 BASIC20.54■□□□□ 0.88
TCRBV7S3A2A0A539 PLD4-205ENST00000553861 667 ntTSL 2 BASIC20.54■□□□□ 0.88
TCRBV7S3A2A0A539 PLLP-204ENST00000569059 665 ntTSL 3 BASIC20.54■□□□□ 0.88
TCRBV7S3A2A0A539 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
TCRBV7S3A2A0A539 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC20.54■□□□□ 0.88
TCRBV7S3A2A0A539 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
TCRBV7S3A2A0A539 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
TCRBV7S3A2A0A539 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TCRBV7S3A2A0A539 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
TCRBV7S3A2A0A539 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
TCRBV7S3A2A0A539 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
TCRBV7S3A2A0A539 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
TCRBV7S3A2A0A539 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC20.54■□□□□ 0.88
TCRBV7S3A2A0A539 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
TCRBV7S3A2A0A539 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
TCRBV7S3A2A0A539 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
TCRBV7S3A2A0A539 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
TCRBV7S3A2A0A539 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC20.53■□□□□ 0.88
TCRBV7S3A2A0A539 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
TCRBV7S3A2A0A539 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC20.53■□□□□ 0.88
TCRBV7S3A2A0A539 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC20.53■□□□□ 0.88
TCRBV7S3A2A0A539 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC20.53■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms