Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
USP3Q9Y6I4 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC21.25■□□□□ 0.99
USP3Q9Y6I4 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC21.25■□□□□ 0.99
USP3Q9Y6I4 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC21.24■□□□□ 0.99
USP3Q9Y6I4 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
USP3Q9Y6I4 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
USP3Q9Y6I4 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
USP3Q9Y6I4 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
USP3Q9Y6I4 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
USP3Q9Y6I4 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
USP3Q9Y6I4 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
USP3Q9Y6I4 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
USP3Q9Y6I4 GAS7-202ENST00000396115 929 ntTSL 5 BASIC21.24■□□□□ 0.99
USP3Q9Y6I4 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC21.24■□□□□ 0.99
USP3Q9Y6I4 PNMA6B-201ENST00000538162 1200 ntBASIC21.24■□□□□ 0.99
USP3Q9Y6I4 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC21.24■□□□□ 0.99
USP3Q9Y6I4 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
USP3Q9Y6I4 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC21.24■□□□□ 0.99
USP3Q9Y6I4 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC21.24■□□□□ 0.99
USP3Q9Y6I4 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC21.24■□□□□ 0.99
USP3Q9Y6I4 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC21.24■□□□□ 0.99
USP3Q9Y6I4 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
USP3Q9Y6I4 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
USP3Q9Y6I4 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
USP3Q9Y6I4 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC21.23■□□□□ 0.99
USP3Q9Y6I4 ABHD17AP1-201ENST00000358206 933 ntBASIC21.23■□□□□ 0.99
USP3Q9Y6I4 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC21.23■□□□□ 0.99
USP3Q9Y6I4 TSPY20P-201ENST00000450910 630 ntBASIC21.23■□□□□ 0.99
USP3Q9Y6I4 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC21.23■□□□□ 0.99
USP3Q9Y6I4 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC21.23■□□□□ 0.99
USP3Q9Y6I4 SLC29A4P2-201ENST00000504749 1089 ntBASIC21.23■□□□□ 0.99
USP3Q9Y6I4 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
USP3Q9Y6I4 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC21.23■□□□□ 0.99
USP3Q9Y6I4 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC21.23■□□□□ 0.99
USP3Q9Y6I4 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
USP3Q9Y6I4 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
USP3Q9Y6I4 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC21.23■□□□□ 0.99
USP3Q9Y6I4 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
USP3Q9Y6I4 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
USP3Q9Y6I4 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
USP3Q9Y6I4 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
USP3Q9Y6I4 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC21.23■□□□□ 0.99
USP3Q9Y6I4 AC092368.3-202ENST00000574180 1591 ntBASIC21.23■□□□□ 0.99
USP3Q9Y6I4 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
USP3Q9Y6I4 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
USP3Q9Y6I4 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
USP3Q9Y6I4 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC21.22■□□□□ 0.99
USP3Q9Y6I4 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC21.22■□□□□ 0.99
USP3Q9Y6I4 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
USP3Q9Y6I4 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC21.22■□□□□ 0.99
USP3Q9Y6I4 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
USP3Q9Y6I4 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC21.22■□□□□ 0.99
USP3Q9Y6I4 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC21.22■□□□□ 0.99
USP3Q9Y6I4 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
USP3Q9Y6I4 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
USP3Q9Y6I4 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
USP3Q9Y6I4 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
USP3Q9Y6I4 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
USP3Q9Y6I4 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
USP3Q9Y6I4 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC21.22■□□□□ 0.99
USP3Q9Y6I4 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
USP3Q9Y6I4 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
USP3Q9Y6I4 AC073314.1-201ENST00000568729 2216 ntBASIC21.21■□□□□ 0.99
USP3Q9Y6I4 AP005212.1-201ENST00000581547 1997 ntBASIC21.21■□□□□ 0.99
USP3Q9Y6I4 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
USP3Q9Y6I4 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC21.21■□□□□ 0.99
USP3Q9Y6I4 MOK-233ENST00000524214 1539 ntTSL 2 BASIC21.21■□□□□ 0.99
USP3Q9Y6I4 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
USP3Q9Y6I4 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
USP3Q9Y6I4 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC21.21■□□□□ 0.99
USP3Q9Y6I4 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
USP3Q9Y6I4 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC21.21■□□□□ 0.99
USP3Q9Y6I4 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC21.21■□□□□ 0.99
USP3Q9Y6I4 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
USP3Q9Y6I4 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC21.21■□□□□ 0.99
USP3Q9Y6I4 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
USP3Q9Y6I4 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC21.21■□□□□ 0.99
USP3Q9Y6I4 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC21.21■□□□□ 0.99
USP3Q9Y6I4 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC21.21■□□□□ 0.99
USP3Q9Y6I4 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
USP3Q9Y6I4 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
USP3Q9Y6I4 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC21.2■□□□□ 0.99
USP3Q9Y6I4 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC21.2■□□□□ 0.98
USP3Q9Y6I4 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC21.2■□□□□ 0.98
USP3Q9Y6I4 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
USP3Q9Y6I4 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
USP3Q9Y6I4 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
USP3Q9Y6I4 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
USP3Q9Y6I4 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
USP3Q9Y6I4 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC21.2■□□□□ 0.98
USP3Q9Y6I4 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
USP3Q9Y6I4 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC21.2■□□□□ 0.98
USP3Q9Y6I4 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC21.2■□□□□ 0.98
USP3Q9Y6I4 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC21.2■□□□□ 0.98
USP3Q9Y6I4 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
USP3Q9Y6I4 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
USP3Q9Y6I4 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
USP3Q9Y6I4 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
USP3Q9Y6I4 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
USP3Q9Y6I4 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC21.19■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 21.7 ms