Protein–RNA interactions for Protein: Q9Y5I3

PCDHA1, Protocadherin alpha-1, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1Q9Y5I3 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
PCDHA1Q9Y5I3 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC23.26■■□□□ 1.31
PCDHA1Q9Y5I3 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC23.26■■□□□ 1.31
PCDHA1Q9Y5I3 AC005829.2-201ENST00000571422 1056 ntBASIC23.26■■□□□ 1.31
PCDHA1Q9Y5I3 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC23.26■■□□□ 1.31
PCDHA1Q9Y5I3 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC23.26■■□□□ 1.31
PCDHA1Q9Y5I3 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC23.26■■□□□ 1.31
PCDHA1Q9Y5I3 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
PCDHA1Q9Y5I3 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
PCDHA1Q9Y5I3 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC23.26■■□□□ 1.31
PCDHA1Q9Y5I3 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
PCDHA1Q9Y5I3 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC23.26■■□□□ 1.31
PCDHA1Q9Y5I3 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC23.26■■□□□ 1.31
PCDHA1Q9Y5I3 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
PCDHA1Q9Y5I3 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC23.25■■□□□ 1.31
PCDHA1Q9Y5I3 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC23.25■■□□□ 1.31
PCDHA1Q9Y5I3 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
PCDHA1Q9Y5I3 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
PCDHA1Q9Y5I3 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
PCDHA1Q9Y5I3 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
PCDHA1Q9Y5I3 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
PCDHA1Q9Y5I3 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC23.25■■□□□ 1.31
PCDHA1Q9Y5I3 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
PCDHA1Q9Y5I3 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC23.25■■□□□ 1.31
PCDHA1Q9Y5I3 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
PCDHA1Q9Y5I3 AC128676.1-201ENST00000454392 318 ntBASIC23.25■■□□□ 1.31
PCDHA1Q9Y5I3 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
PCDHA1Q9Y5I3 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC23.25■■□□□ 1.31
PCDHA1Q9Y5I3 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC23.25■■□□□ 1.31
PCDHA1Q9Y5I3 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC23.25■■□□□ 1.31
PCDHA1Q9Y5I3 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC23.25■■□□□ 1.31
PCDHA1Q9Y5I3 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
PCDHA1Q9Y5I3 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
PCDHA1Q9Y5I3 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
PCDHA1Q9Y5I3 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC23.25■■□□□ 1.31
PCDHA1Q9Y5I3 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC23.24■■□□□ 1.31
PCDHA1Q9Y5I3 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
PCDHA1Q9Y5I3 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
PCDHA1Q9Y5I3 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC23.24■■□□□ 1.31
PCDHA1Q9Y5I3 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
PCDHA1Q9Y5I3 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
PCDHA1Q9Y5I3 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC23.24■■□□□ 1.31
PCDHA1Q9Y5I3 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC23.24■■□□□ 1.31
PCDHA1Q9Y5I3 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC23.24■■□□□ 1.31
PCDHA1Q9Y5I3 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC23.24■■□□□ 1.31
PCDHA1Q9Y5I3 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC23.24■■□□□ 1.31
PCDHA1Q9Y5I3 AC073648.6-201ENST00000641589 218 ntBASIC23.24■■□□□ 1.31
PCDHA1Q9Y5I3 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
PCDHA1Q9Y5I3 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC23.24■■□□□ 1.31
PCDHA1Q9Y5I3 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC23.24■■□□□ 1.31
PCDHA1Q9Y5I3 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
PCDHA1Q9Y5I3 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC23.24■■□□□ 1.31
PCDHA1Q9Y5I3 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
PCDHA1Q9Y5I3 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
PCDHA1Q9Y5I3 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
PCDHA1Q9Y5I3 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC23.23■■□□□ 1.31
PCDHA1Q9Y5I3 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC23.23■■□□□ 1.31
PCDHA1Q9Y5I3 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
PCDHA1Q9Y5I3 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
PCDHA1Q9Y5I3 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC23.23■■□□□ 1.31
PCDHA1Q9Y5I3 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
PCDHA1Q9Y5I3 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC23.23■■□□□ 1.31
PCDHA1Q9Y5I3 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC23.23■■□□□ 1.31
PCDHA1Q9Y5I3 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC23.23■■□□□ 1.31
PCDHA1Q9Y5I3 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC23.23■■□□□ 1.31
PCDHA1Q9Y5I3 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC23.23■■□□□ 1.31
PCDHA1Q9Y5I3 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC23.23■■□□□ 1.31
PCDHA1Q9Y5I3 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC23.23■■□□□ 1.31
PCDHA1Q9Y5I3 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC23.23■■□□□ 1.31
PCDHA1Q9Y5I3 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC23.23■■□□□ 1.31
PCDHA1Q9Y5I3 AC008687.6-201ENST00000596318 630 ntBASIC23.23■■□□□ 1.31
PCDHA1Q9Y5I3 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC23.23■■□□□ 1.31
PCDHA1Q9Y5I3 AC006557.6-201ENST00000623071 864 ntBASIC23.23■■□□□ 1.31
PCDHA1Q9Y5I3 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC23.23■■□□□ 1.31
PCDHA1Q9Y5I3 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
PCDHA1Q9Y5I3 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
PCDHA1Q9Y5I3 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
PCDHA1Q9Y5I3 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC23.23■■□□□ 1.31
PCDHA1Q9Y5I3 BID-203ENST00000399765 1879 ntTSL 2 BASIC23.23■■□□□ 1.31
PCDHA1Q9Y5I3 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
PCDHA1Q9Y5I3 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
PCDHA1Q9Y5I3 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
PCDHA1Q9Y5I3 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC23.22■■□□□ 1.31
PCDHA1Q9Y5I3 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
PCDHA1Q9Y5I3 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC23.22■■□□□ 1.31
PCDHA1Q9Y5I3 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC23.22■■□□□ 1.31
PCDHA1Q9Y5I3 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
PCDHA1Q9Y5I3 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC23.22■■□□□ 1.31
PCDHA1Q9Y5I3 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
PCDHA1Q9Y5I3 AL390719.1-204ENST00000412397 1219 ntBASIC23.22■■□□□ 1.31
PCDHA1Q9Y5I3 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC23.22■■□□□ 1.31
PCDHA1Q9Y5I3 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC23.22■■□□□ 1.31
PCDHA1Q9Y5I3 IRX5-204ENST00000560154 879 ntTSL 5 BASIC23.22■■□□□ 1.31
PCDHA1Q9Y5I3 KLF2-202ENST00000592003 564 ntTSL 3 BASIC23.22■■□□□ 1.31
PCDHA1Q9Y5I3 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC23.22■■□□□ 1.31
PCDHA1Q9Y5I3 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
PCDHA1Q9Y5I3 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
PCDHA1Q9Y5I3 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
PCDHA1Q9Y5I3 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC23.22■■□□□ 1.31
PCDHA1Q9Y5I3 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC23.22■■□□□ 1.31
Retrieved 100 of 98,524 protein–RNA pairs in 47.7 ms