Protein–RNA interactions for Protein: Q9Y4P1

ATG4B, Cysteine protease ATG4B, humanhuman

Predictions only

Length 393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4BQ9Y4P1 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC19.2■□□□□ 0.66
ATG4BQ9Y4P1 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC19.19■□□□□ 0.66
ATG4BQ9Y4P1 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC19.19■□□□□ 0.66
ATG4BQ9Y4P1 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
ATG4BQ9Y4P1 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
ATG4BQ9Y4P1 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC19.19■□□□□ 0.66
ATG4BQ9Y4P1 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC19.19■□□□□ 0.66
ATG4BQ9Y4P1 AC083906.2-201ENST00000511578 360 ntBASIC19.19■□□□□ 0.66
ATG4BQ9Y4P1 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC19.19■□□□□ 0.66
ATG4BQ9Y4P1 OAS3-207ENST00000551007 998 ntTSL 2 BASIC19.19■□□□□ 0.66
ATG4BQ9Y4P1 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
ATG4BQ9Y4P1 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC19.19■□□□□ 0.66
ATG4BQ9Y4P1 MARS-234ENST00000630571 216 ntTSL 5 BASIC19.19■□□□□ 0.66
ATG4BQ9Y4P1 MARS-235ENST00000630803 183 ntTSL 3 BASIC19.19■□□□□ 0.66
ATG4BQ9Y4P1 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
ATG4BQ9Y4P1 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
ATG4BQ9Y4P1 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
ATG4BQ9Y4P1 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC19.19■□□□□ 0.66
ATG4BQ9Y4P1 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
ATG4BQ9Y4P1 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC19.19■□□□□ 0.66
ATG4BQ9Y4P1 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
ATG4BQ9Y4P1 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
ATG4BQ9Y4P1 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
ATG4BQ9Y4P1 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
ATG4BQ9Y4P1 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC19.18■□□□□ 0.66
ATG4BQ9Y4P1 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
ATG4BQ9Y4P1 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
ATG4BQ9Y4P1 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
ATG4BQ9Y4P1 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
ATG4BQ9Y4P1 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
ATG4BQ9Y4P1 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
ATG4BQ9Y4P1 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
ATG4BQ9Y4P1 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
ATG4BQ9Y4P1 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
ATG4BQ9Y4P1 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
ATG4BQ9Y4P1 PHB2-213ENST00000546111 858 ntTSL 2 BASIC19.18■□□□□ 0.66
ATG4BQ9Y4P1 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC19.18■□□□□ 0.66
ATG4BQ9Y4P1 AL121832.2-201ENST00000610979 668 ntBASIC19.18■□□□□ 0.66
ATG4BQ9Y4P1 WT1-AS_3.1-201ENST00000613262 234 ntBASIC19.18■□□□□ 0.66
ATG4BQ9Y4P1 AC105020.6-201ENST00000621523 1217 ntBASIC19.18■□□□□ 0.66
ATG4BQ9Y4P1 KRT17P1-201ENST00000399211 1546 ntBASIC19.18■□□□□ 0.66
ATG4BQ9Y4P1 MKRN4P-201ENST00000444706 1521 ntBASIC19.18■□□□□ 0.66
ATG4BQ9Y4P1 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
ATG4BQ9Y4P1 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
ATG4BQ9Y4P1 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC19.18■□□□□ 0.66
ATG4BQ9Y4P1 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC19.18■□□□□ 0.66
ATG4BQ9Y4P1 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC19.18■□□□□ 0.66
ATG4BQ9Y4P1 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
ATG4BQ9Y4P1 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
ATG4BQ9Y4P1 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
ATG4BQ9Y4P1 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
ATG4BQ9Y4P1 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC19.17■□□□□ 0.66
ATG4BQ9Y4P1 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
ATG4BQ9Y4P1 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
ATG4BQ9Y4P1 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
ATG4BQ9Y4P1 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
ATG4BQ9Y4P1 NCF1B-203ENST00000435988 1254 ntBASIC19.17■□□□□ 0.66
ATG4BQ9Y4P1 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC19.17■□□□□ 0.66
ATG4BQ9Y4P1 ISCU-212ENST00000547005 795 ntTSL 3 BASIC19.17■□□□□ 0.66
ATG4BQ9Y4P1 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC19.17■□□□□ 0.66
ATG4BQ9Y4P1 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC19.16■□□□□ 0.66
ATG4BQ9Y4P1 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
ATG4BQ9Y4P1 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC19.16■□□□□ 0.66
ATG4BQ9Y4P1 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC19.16■□□□□ 0.66
ATG4BQ9Y4P1 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
ATG4BQ9Y4P1 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC19.16■□□□□ 0.66
ATG4BQ9Y4P1 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
ATG4BQ9Y4P1 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC19.16■□□□□ 0.66
ATG4BQ9Y4P1 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC19.16■□□□□ 0.66
ATG4BQ9Y4P1 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC19.16■□□□□ 0.66
ATG4BQ9Y4P1 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
ATG4BQ9Y4P1 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
ATG4BQ9Y4P1 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
ATG4BQ9Y4P1 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
ATG4BQ9Y4P1 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
ATG4BQ9Y4P1 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC19.16■□□□□ 0.66
ATG4BQ9Y4P1 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
ATG4BQ9Y4P1 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
ATG4BQ9Y4P1 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC19.16■□□□□ 0.66
ATG4BQ9Y4P1 AL162377.1-201ENST00000618844 1793 ntBASIC19.16■□□□□ 0.66
ATG4BQ9Y4P1 SMG8-203ENST00000578922 2178 ntBASIC19.16■□□□□ 0.66
ATG4BQ9Y4P1 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
ATG4BQ9Y4P1 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
ATG4BQ9Y4P1 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
ATG4BQ9Y4P1 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
ATG4BQ9Y4P1 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC19.15■□□□□ 0.66
ATG4BQ9Y4P1 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC19.15■□□□□ 0.66
ATG4BQ9Y4P1 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
ATG4BQ9Y4P1 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC19.15■□□□□ 0.66
ATG4BQ9Y4P1 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
ATG4BQ9Y4P1 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC19.15■□□□□ 0.66
ATG4BQ9Y4P1 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
ATG4BQ9Y4P1 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
ATG4BQ9Y4P1 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC19.15■□□□□ 0.66
ATG4BQ9Y4P1 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC19.15■□□□□ 0.66
ATG4BQ9Y4P1 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
ATG4BQ9Y4P1 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC19.15■□□□□ 0.66
ATG4BQ9Y4P1 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC19.15■□□□□ 0.66
ATG4BQ9Y4P1 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC19.15■□□□□ 0.66
ATG4BQ9Y4P1 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 19.8 ms