Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
LIME1Q9H400 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
LIME1Q9H400 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
LIME1Q9H400 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC17.78■□□□□ 0.44
LIME1Q9H400 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
LIME1Q9H400 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC17.78■□□□□ 0.44
LIME1Q9H400 LINC01023-201ENST00000606054 436 ntBASIC17.78■□□□□ 0.44
LIME1Q9H400 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC17.78■□□□□ 0.44
LIME1Q9H400 AC003102.1-202ENST00000563394 1796 ntBASIC17.78■□□□□ 0.44
LIME1Q9H400 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC17.78■□□□□ 0.44
LIME1Q9H400 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
LIME1Q9H400 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
LIME1Q9H400 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC17.78■□□□□ 0.44
LIME1Q9H400 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC17.78■□□□□ 0.44
LIME1Q9H400 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
LIME1Q9H400 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
LIME1Q9H400 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
LIME1Q9H400 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC17.77■□□□□ 0.44
LIME1Q9H400 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC17.77■□□□□ 0.44
LIME1Q9H400 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
LIME1Q9H400 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
LIME1Q9H400 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC17.77■□□□□ 0.44
LIME1Q9H400 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
LIME1Q9H400 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC17.77■□□□□ 0.44
LIME1Q9H400 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC17.77■□□□□ 0.44
LIME1Q9H400 SLC29A4P2-201ENST00000504749 1089 ntBASIC17.77■□□□□ 0.44
LIME1Q9H400 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC17.77■□□□□ 0.44
LIME1Q9H400 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC17.77■□□□□ 0.44
LIME1Q9H400 AC069544.1-201ENST00000609399 999 ntBASIC17.77■□□□□ 0.44
LIME1Q9H400 AL589743.5-201ENST00000616611 1050 ntBASIC17.77■□□□□ 0.44
LIME1Q9H400 AC100791.3-201ENST00000617619 330 ntBASIC17.77■□□□□ 0.44
LIME1Q9H400 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
LIME1Q9H400 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
LIME1Q9H400 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC17.77■□□□□ 0.44
LIME1Q9H400 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
LIME1Q9H400 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
LIME1Q9H400 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
LIME1Q9H400 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
LIME1Q9H400 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
LIME1Q9H400 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC17.76■□□□□ 0.43
LIME1Q9H400 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
LIME1Q9H400 LINC01521-201ENST00000504184 1943 ntBASIC17.76■□□□□ 0.43
LIME1Q9H400 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC17.76■□□□□ 0.43
LIME1Q9H400 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
LIME1Q9H400 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
LIME1Q9H400 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
LIME1Q9H400 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
LIME1Q9H400 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC17.76■□□□□ 0.43
LIME1Q9H400 OR2A1-AS1-207ENST00000486094 819 ntBASIC17.76■□□□□ 0.43
LIME1Q9H400 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC17.76■□□□□ 0.43
LIME1Q9H400 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC17.76■□□□□ 0.43
LIME1Q9H400 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC17.76■□□□□ 0.43
LIME1Q9H400 REXO2-208ENST00000539754 791 ntTSL 2 BASIC17.76■□□□□ 0.43
LIME1Q9H400 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
LIME1Q9H400 CBFB-203ENST00000561924 584 ntTSL 5 BASIC17.76■□□□□ 0.43
LIME1Q9H400 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC17.76■□□□□ 0.43
LIME1Q9H400 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC17.76■□□□□ 0.43
LIME1Q9H400 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC17.76■□□□□ 0.43
LIME1Q9H400 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
LIME1Q9H400 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC17.76■□□□□ 0.43
LIME1Q9H400 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
LIME1Q9H400 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
LIME1Q9H400 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
LIME1Q9H400 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC17.75■□□□□ 0.43
LIME1Q9H400 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
LIME1Q9H400 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC17.75■□□□□ 0.43
LIME1Q9H400 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
LIME1Q9H400 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
LIME1Q9H400 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
LIME1Q9H400 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
LIME1Q9H400 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
LIME1Q9H400 MDFI-202ENST00000373050 809 ntTSL 2 BASIC17.75■□□□□ 0.43
LIME1Q9H400 TSPY7P-201ENST00000431358 1114 ntBASIC17.75■□□□□ 0.43
LIME1Q9H400 VMO1-204ENST00000441199 741 ntTSL 2 BASIC17.75■□□□□ 0.43
LIME1Q9H400 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
LIME1Q9H400 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC17.75■□□□□ 0.43
LIME1Q9H400 CDV3P1-201ENST00000471403 739 ntBASIC17.75■□□□□ 0.43
LIME1Q9H400 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC17.75■□□□□ 0.43
LIME1Q9H400 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC17.75■□□□□ 0.43
LIME1Q9H400 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC17.75■□□□□ 0.43
LIME1Q9H400 TK2-204ENST00000525974 1178 ntTSL 2 BASIC17.75■□□□□ 0.43
LIME1Q9H400 REXO2-216ENST00000544196 452 ntTSL 3 BASIC17.75■□□□□ 0.43
LIME1Q9H400 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
LIME1Q9H400 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
LIME1Q9H400 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
LIME1Q9H400 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
LIME1Q9H400 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC17.75■□□□□ 0.43
LIME1Q9H400 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
LIME1Q9H400 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
LIME1Q9H400 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC17.75■□□□□ 0.43
LIME1Q9H400 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
LIME1Q9H400 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
LIME1Q9H400 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
LIME1Q9H400 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC17.74■□□□□ 0.43
LIME1Q9H400 LINC01006-201ENST00000333319 2292 ntBASIC17.74■□□□□ 0.43
LIME1Q9H400 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC17.74■□□□□ 0.43
LIME1Q9H400 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
LIME1Q9H400 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
LIME1Q9H400 MCRIP2P1-201ENST00000394346 511 ntBASIC17.74■□□□□ 0.43
LIME1Q9H400 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC17.74■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms