Protein–RNA interactions for Protein: Q8IXQ3

C9orf40, Uncharacterized protein C9orf40, humanhuman

Predictions only

Length 194 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf40Q8IXQ3 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
C9orf40Q8IXQ3 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC18.73■□□□□ 0.59
C9orf40Q8IXQ3 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC18.73■□□□□ 0.59
C9orf40Q8IXQ3 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
C9orf40Q8IXQ3 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
C9orf40Q8IXQ3 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
C9orf40Q8IXQ3 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC18.72■□□□□ 0.59
C9orf40Q8IXQ3 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC18.72■□□□□ 0.59
C9orf40Q8IXQ3 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
C9orf40Q8IXQ3 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
C9orf40Q8IXQ3 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
C9orf40Q8IXQ3 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC18.72■□□□□ 0.59
C9orf40Q8IXQ3 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
C9orf40Q8IXQ3 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
C9orf40Q8IXQ3 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
C9orf40Q8IXQ3 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
C9orf40Q8IXQ3 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC18.72■□□□□ 0.59
C9orf40Q8IXQ3 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC18.72■□□□□ 0.59
C9orf40Q8IXQ3 SERP1-205ENST00000487153 657 ntTSL 4 BASIC18.72■□□□□ 0.59
C9orf40Q8IXQ3 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC18.72■□□□□ 0.59
C9orf40Q8IXQ3 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC18.72■□□□□ 0.59
C9orf40Q8IXQ3 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC18.72■□□□□ 0.59
C9orf40Q8IXQ3 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
C9orf40Q8IXQ3 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
C9orf40Q8IXQ3 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC18.72■□□□□ 0.59
C9orf40Q8IXQ3 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
C9orf40Q8IXQ3 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
C9orf40Q8IXQ3 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
C9orf40Q8IXQ3 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
C9orf40Q8IXQ3 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
C9orf40Q8IXQ3 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC18.72■□□□□ 0.59
C9orf40Q8IXQ3 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC18.71■□□□□ 0.59
C9orf40Q8IXQ3 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
C9orf40Q8IXQ3 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
C9orf40Q8IXQ3 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
C9orf40Q8IXQ3 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
C9orf40Q8IXQ3 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC18.71■□□□□ 0.59
C9orf40Q8IXQ3 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
C9orf40Q8IXQ3 AC060766.5-201ENST00000590539 871 ntBASIC18.71■□□□□ 0.59
C9orf40Q8IXQ3 TBCB-214ENST00000629269 413 ntTSL 5 BASIC18.71■□□□□ 0.59
C9orf40Q8IXQ3 AC073314.1-201ENST00000568729 2216 ntBASIC18.71■□□□□ 0.59
C9orf40Q8IXQ3 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC18.71■□□□□ 0.59
C9orf40Q8IXQ3 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
C9orf40Q8IXQ3 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
C9orf40Q8IXQ3 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
C9orf40Q8IXQ3 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
C9orf40Q8IXQ3 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC18.71■□□□□ 0.59
C9orf40Q8IXQ3 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
C9orf40Q8IXQ3 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC18.7■□□□□ 0.58
C9orf40Q8IXQ3 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
C9orf40Q8IXQ3 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
C9orf40Q8IXQ3 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
C9orf40Q8IXQ3 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
C9orf40Q8IXQ3 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC18.7■□□□□ 0.58
C9orf40Q8IXQ3 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
C9orf40Q8IXQ3 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
C9orf40Q8IXQ3 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
C9orf40Q8IXQ3 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
C9orf40Q8IXQ3 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
C9orf40Q8IXQ3 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
C9orf40Q8IXQ3 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC18.7■□□□□ 0.58
C9orf40Q8IXQ3 AC092368.3-202ENST00000574180 1591 ntBASIC18.7■□□□□ 0.58
C9orf40Q8IXQ3 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
C9orf40Q8IXQ3 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC18.7■□□□□ 0.58
C9orf40Q8IXQ3 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
C9orf40Q8IXQ3 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
C9orf40Q8IXQ3 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
C9orf40Q8IXQ3 DPP3P2-201ENST00000416030 1696 ntBASIC18.69■□□□□ 0.58
C9orf40Q8IXQ3 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC18.69■□□□□ 0.58
C9orf40Q8IXQ3 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
C9orf40Q8IXQ3 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
C9orf40Q8IXQ3 MOK-233ENST00000524214 1539 ntTSL 2 BASIC18.69■□□□□ 0.58
C9orf40Q8IXQ3 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC18.69■□□□□ 0.58
C9orf40Q8IXQ3 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
C9orf40Q8IXQ3 PKD1P6-201ENST00000343738 4769 ntBASIC18.69■□□□□ 0.58
C9orf40Q8IXQ3 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
C9orf40Q8IXQ3 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
C9orf40Q8IXQ3 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC18.69■□□□□ 0.58
C9orf40Q8IXQ3 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
C9orf40Q8IXQ3 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC18.69■□□□□ 0.58
C9orf40Q8IXQ3 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
C9orf40Q8IXQ3 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC18.69■□□□□ 0.58
C9orf40Q8IXQ3 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC18.69■□□□□ 0.58
C9orf40Q8IXQ3 PNMA6B-201ENST00000538162 1200 ntBASIC18.69■□□□□ 0.58
C9orf40Q8IXQ3 MIR4651-201ENST00000582622 73 ntBASIC18.69■□□□□ 0.58
C9orf40Q8IXQ3 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
C9orf40Q8IXQ3 FEM1AP1-201ENST00000431297 1995 ntBASIC18.69■□□□□ 0.58
C9orf40Q8IXQ3 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
C9orf40Q8IXQ3 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
C9orf40Q8IXQ3 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
C9orf40Q8IXQ3 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
C9orf40Q8IXQ3 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC18.69■□□□□ 0.58
C9orf40Q8IXQ3 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
C9orf40Q8IXQ3 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
C9orf40Q8IXQ3 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC18.69■□□□□ 0.58
C9orf40Q8IXQ3 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
C9orf40Q8IXQ3 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC18.68■□□□□ 0.58
C9orf40Q8IXQ3 PTBP1P-201ENST00000554374 1601 ntBASIC18.68■□□□□ 0.58
C9orf40Q8IXQ3 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
C9orf40Q8IXQ3 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 21.5 ms