Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 PPP1R14BP3-201ENST00000509033 445 ntBASIC17.9■□□□□ 0.46
SKA3Q8IX90 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC17.9■□□□□ 0.46
SKA3Q8IX90 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC17.9■□□□□ 0.46
SKA3Q8IX90 AC100791.3-201ENST00000617619 330 ntBASIC17.9■□□□□ 0.46
SKA3Q8IX90 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC17.9■□□□□ 0.46
SKA3Q8IX90 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SKA3Q8IX90 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SKA3Q8IX90 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SKA3Q8IX90 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
SKA3Q8IX90 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
SKA3Q8IX90 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC17.9■□□□□ 0.46
SKA3Q8IX90 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
SKA3Q8IX90 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.46
SKA3Q8IX90 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.46
SKA3Q8IX90 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC17.89■□□□□ 0.46
SKA3Q8IX90 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
SKA3Q8IX90 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SKA3Q8IX90 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC17.89■□□□□ 0.45
SKA3Q8IX90 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC17.89■□□□□ 0.45
SKA3Q8IX90 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC17.89■□□□□ 0.45
SKA3Q8IX90 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SKA3Q8IX90 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
SKA3Q8IX90 AL512625.2-201ENST00000417533 625 ntBASIC17.89■□□□□ 0.45
SKA3Q8IX90 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC17.89■□□□□ 0.45
SKA3Q8IX90 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC17.89■□□□□ 0.45
SKA3Q8IX90 AC090192.1-201ENST00000517740 490 ntBASIC17.89■□□□□ 0.45
SKA3Q8IX90 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC17.89■□□□□ 0.45
SKA3Q8IX90 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC17.89■□□□□ 0.45
SKA3Q8IX90 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SKA3Q8IX90 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
SKA3Q8IX90 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
SKA3Q8IX90 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC17.89■□□□□ 0.45
SKA3Q8IX90 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
SKA3Q8IX90 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
SKA3Q8IX90 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SKA3Q8IX90 AC010980.2-201ENST00000587099 1412 ntBASIC17.89■□□□□ 0.45
SKA3Q8IX90 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC17.89■□□□□ 0.45
SKA3Q8IX90 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC17.88■□□□□ 0.45
SKA3Q8IX90 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC17.88■□□□□ 0.45
SKA3Q8IX90 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
SKA3Q8IX90 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC17.88■□□□□ 0.45
SKA3Q8IX90 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC17.88■□□□□ 0.45
SKA3Q8IX90 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
SKA3Q8IX90 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SKA3Q8IX90 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SKA3Q8IX90 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SKA3Q8IX90 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
SKA3Q8IX90 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC17.88■□□□□ 0.45
SKA3Q8IX90 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
SKA3Q8IX90 MCRIP2P1-201ENST00000394346 511 ntBASIC17.88■□□□□ 0.45
SKA3Q8IX90 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC17.88■□□□□ 0.45
SKA3Q8IX90 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC17.88■□□□□ 0.45
SKA3Q8IX90 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
SKA3Q8IX90 AF201337.1-201ENST00000520239 748 ntBASIC17.88■□□□□ 0.45
SKA3Q8IX90 AC105036.2-201ENST00000569468 176 ntBASIC17.88■□□□□ 0.45
SKA3Q8IX90 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
SKA3Q8IX90 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
SKA3Q8IX90 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
SKA3Q8IX90 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC17.88■□□□□ 0.45
SKA3Q8IX90 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
SKA3Q8IX90 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC17.88■□□□□ 0.45
SKA3Q8IX90 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC17.87■□□□□ 0.45
SKA3Q8IX90 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC17.87■□□□□ 0.45
SKA3Q8IX90 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
SKA3Q8IX90 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
SKA3Q8IX90 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
SKA3Q8IX90 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
SKA3Q8IX90 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC17.87■□□□□ 0.45
SKA3Q8IX90 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC17.87■□□□□ 0.45
SKA3Q8IX90 METTL15-202ENST00000403099 795 ntTSL 5 BASIC17.87■□□□□ 0.45
SKA3Q8IX90 AL355472.2-201ENST00000422958 438 ntBASIC17.87■□□□□ 0.45
SKA3Q8IX90 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
SKA3Q8IX90 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC17.87■□□□□ 0.45
SKA3Q8IX90 AC083906.2-201ENST00000511578 360 ntBASIC17.87■□□□□ 0.45
SKA3Q8IX90 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC17.87■□□□□ 0.45
SKA3Q8IX90 FEM1AP1-201ENST00000431297 1995 ntBASIC17.87■□□□□ 0.45
SKA3Q8IX90 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC17.87■□□□□ 0.45
SKA3Q8IX90 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
SKA3Q8IX90 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
SKA3Q8IX90 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
SKA3Q8IX90 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC17.87■□□□□ 0.45
SKA3Q8IX90 AC087633.2-202ENST00000565166 1439 ntBASIC17.87■□□□□ 0.45
SKA3Q8IX90 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
SKA3Q8IX90 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
SKA3Q8IX90 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC17.87■□□□□ 0.45
SKA3Q8IX90 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
SKA3Q8IX90 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
SKA3Q8IX90 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC17.86■□□□□ 0.45
SKA3Q8IX90 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC17.86■□□□□ 0.45
SKA3Q8IX90 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
SKA3Q8IX90 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
SKA3Q8IX90 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
SKA3Q8IX90 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
SKA3Q8IX90 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
SKA3Q8IX90 AL157384.1-201ENST00000445995 2473 ntBASIC17.86■□□□□ 0.45
SKA3Q8IX90 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
SKA3Q8IX90 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC17.86■□□□□ 0.45
SKA3Q8IX90 TK2-208ENST00000545043 1120 ntTSL 2 BASIC17.86■□□□□ 0.45
SKA3Q8IX90 OAS3-207ENST00000551007 998 ntTSL 2 BASIC17.86■□□□□ 0.45
SKA3Q8IX90 AL121832.2-201ENST00000610979 668 ntBASIC17.86■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 53.5 ms