Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC16.9■□□□□ 0.3
CCDC28AQ8IWP9 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC16.9■□□□□ 0.3
CCDC28AQ8IWP9 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CCDC28AQ8IWP9 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
CCDC28AQ8IWP9 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CCDC28AQ8IWP9 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
CCDC28AQ8IWP9 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CCDC28AQ8IWP9 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CCDC28AQ8IWP9 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC16.9■□□□□ 0.3
CCDC28AQ8IWP9 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CCDC28AQ8IWP9 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC16.9■□□□□ 0.3
CCDC28AQ8IWP9 AC006128.1-201ENST00000624704 1661 ntBASIC16.9■□□□□ 0.3
CCDC28AQ8IWP9 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC16.9■□□□□ 0.3
CCDC28AQ8IWP9 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CCDC28AQ8IWP9 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC16.9■□□□□ 0.3
CCDC28AQ8IWP9 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
CCDC28AQ8IWP9 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC16.9■□□□□ 0.3
CCDC28AQ8IWP9 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
CCDC28AQ8IWP9 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
CCDC28AQ8IWP9 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
CCDC28AQ8IWP9 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.3
CCDC28AQ8IWP9 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC16.89■□□□□ 0.3
CCDC28AQ8IWP9 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
CCDC28AQ8IWP9 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC16.89■□□□□ 0.29
CCDC28AQ8IWP9 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC16.89■□□□□ 0.29
CCDC28AQ8IWP9 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC16.89■□□□□ 0.29
CCDC28AQ8IWP9 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CCDC28AQ8IWP9 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
CCDC28AQ8IWP9 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC16.89■□□□□ 0.29
CCDC28AQ8IWP9 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC16.89■□□□□ 0.29
CCDC28AQ8IWP9 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC16.89■□□□□ 0.29
CCDC28AQ8IWP9 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC16.89■□□□□ 0.29
CCDC28AQ8IWP9 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC16.89■□□□□ 0.29
CCDC28AQ8IWP9 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC16.89■□□□□ 0.29
CCDC28AQ8IWP9 AC099778.1-201ENST00000568593 1911 ntBASIC16.89■□□□□ 0.29
CCDC28AQ8IWP9 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CCDC28AQ8IWP9 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.29
CCDC28AQ8IWP9 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC16.89■□□□□ 0.29
CCDC28AQ8IWP9 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CCDC28AQ8IWP9 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CCDC28AQ8IWP9 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC16.89■□□□□ 0.29
CCDC28AQ8IWP9 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
CCDC28AQ8IWP9 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC16.89■□□□□ 0.29
CCDC28AQ8IWP9 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CCDC28AQ8IWP9 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.29
CCDC28AQ8IWP9 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC16.89■□□□□ 0.29
CCDC28AQ8IWP9 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
CCDC28AQ8IWP9 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
CCDC28AQ8IWP9 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC16.89■□□□□ 0.29
CCDC28AQ8IWP9 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC16.88■□□□□ 0.29
CCDC28AQ8IWP9 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
CCDC28AQ8IWP9 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
CCDC28AQ8IWP9 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CCDC28AQ8IWP9 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CCDC28AQ8IWP9 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CCDC28AQ8IWP9 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CCDC28AQ8IWP9 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
CCDC28AQ8IWP9 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC16.88■□□□□ 0.29
CCDC28AQ8IWP9 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
CCDC28AQ8IWP9 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
CCDC28AQ8IWP9 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
CCDC28AQ8IWP9 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
CCDC28AQ8IWP9 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
CCDC28AQ8IWP9 LBH-205ENST00000407930 756 ntTSL 2 BASIC16.88■□□□□ 0.29
CCDC28AQ8IWP9 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
CCDC28AQ8IWP9 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC16.88■□□□□ 0.29
CCDC28AQ8IWP9 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC16.88■□□□□ 0.29
CCDC28AQ8IWP9 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
CCDC28AQ8IWP9 AC141586.5-201ENST00000624546 2050 ntBASIC16.88■□□□□ 0.29
CCDC28AQ8IWP9 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC16.88■□□□□ 0.29
CCDC28AQ8IWP9 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CCDC28AQ8IWP9 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CCDC28AQ8IWP9 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CCDC28AQ8IWP9 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CCDC28AQ8IWP9 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC16.88■□□□□ 0.29
CCDC28AQ8IWP9 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
CCDC28AQ8IWP9 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
CCDC28AQ8IWP9 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CCDC28AQ8IWP9 AL162377.1-201ENST00000618844 1793 ntBASIC16.87■□□□□ 0.29
CCDC28AQ8IWP9 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC16.87■□□□□ 0.29
CCDC28AQ8IWP9 CHRND-201ENST00000258385 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CCDC28AQ8IWP9 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC16.87■□□□□ 0.29
CCDC28AQ8IWP9 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
CCDC28AQ8IWP9 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
CCDC28AQ8IWP9 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CCDC28AQ8IWP9 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CCDC28AQ8IWP9 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CCDC28AQ8IWP9 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
CCDC28AQ8IWP9 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC16.87■□□□□ 0.29
CCDC28AQ8IWP9 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CCDC28AQ8IWP9 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
CCDC28AQ8IWP9 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
CCDC28AQ8IWP9 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC16.87■□□□□ 0.29
CCDC28AQ8IWP9 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
CCDC28AQ8IWP9 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC16.87■□□□□ 0.29
CCDC28AQ8IWP9 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
CCDC28AQ8IWP9 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
CCDC28AQ8IWP9 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC16.87■□□□□ 0.29
CCDC28AQ8IWP9 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
CCDC28AQ8IWP9 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms