Protein–RNA interactions for Protein: Q7Z407

CSMD3, CUB and sushi domain-containing protein 3, humanhuman

Predictions only

Length 3,707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3Q7Z407 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.13
CSMD3Q7Z407 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC14.21□□□□□ -0.13
CSMD3Q7Z407 NMU-205ENST00000511469 756 ntTSL 3 BASIC14.21□□□□□ -0.13
CSMD3Q7Z407 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC14.21□□□□□ -0.13
CSMD3Q7Z407 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC14.21□□□□□ -0.13
CSMD3Q7Z407 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC14.21□□□□□ -0.13
CSMD3Q7Z407 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
CSMD3Q7Z407 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
CSMD3Q7Z407 STX5-203ENST00000394690 1568 ntTSL 5 BASIC14.21□□□□□ -0.13
CSMD3Q7Z407 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC14.21□□□□□ -0.13
CSMD3Q7Z407 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CSMD3Q7Z407 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC14.21□□□□□ -0.13
CSMD3Q7Z407 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
CSMD3Q7Z407 NBPF21P-201ENST00000425093 1451 ntBASIC14.21□□□□□ -0.14
CSMD3Q7Z407 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.14
CSMD3Q7Z407 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC14.21□□□□□ -0.14
CSMD3Q7Z407 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC14.21□□□□□ -0.14
CSMD3Q7Z407 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CSMD3Q7Z407 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CSMD3Q7Z407 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CSMD3Q7Z407 DUSP5P1-201ENST00000441325 1139 ntBASIC14.2□□□□□ -0.14
CSMD3Q7Z407 USF2-205ENST00000594064 1179 ntTSL 2 BASIC14.2□□□□□ -0.14
CSMD3Q7Z407 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC14.2□□□□□ -0.14
CSMD3Q7Z407 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC14.2□□□□□ -0.14
CSMD3Q7Z407 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CSMD3Q7Z407 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
CSMD3Q7Z407 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC14.2□□□□□ -0.14
CSMD3Q7Z407 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
CSMD3Q7Z407 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
CSMD3Q7Z407 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CSMD3Q7Z407 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CSMD3Q7Z407 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC14.2□□□□□ -0.14
CSMD3Q7Z407 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC14.2□□□□□ -0.14
CSMD3Q7Z407 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
CSMD3Q7Z407 AL355355.2-201ENST00000442321 338 ntBASIC14.2□□□□□ -0.14
CSMD3Q7Z407 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC14.2□□□□□ -0.14
CSMD3Q7Z407 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC14.2□□□□□ -0.14
CSMD3Q7Z407 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC14.2□□□□□ -0.14
CSMD3Q7Z407 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
CSMD3Q7Z407 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
CSMD3Q7Z407 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC14.19□□□□□ -0.14
CSMD3Q7Z407 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC14.19□□□□□ -0.14
CSMD3Q7Z407 AC073195.1-201ENST00000607241 877 ntBASIC14.19□□□□□ -0.14
CSMD3Q7Z407 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
CSMD3Q7Z407 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
CSMD3Q7Z407 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC14.19□□□□□ -0.14
CSMD3Q7Z407 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC14.19□□□□□ -0.14
CSMD3Q7Z407 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
CSMD3Q7Z407 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
CSMD3Q7Z407 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CSMD3Q7Z407 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC14.19□□□□□ -0.14
CSMD3Q7Z407 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC14.19□□□□□ -0.14
CSMD3Q7Z407 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC14.19□□□□□ -0.14
CSMD3Q7Z407 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC14.19□□□□□ -0.14
CSMD3Q7Z407 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CSMD3Q7Z407 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
CSMD3Q7Z407 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CSMD3Q7Z407 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
CSMD3Q7Z407 AC104076.2-201ENST00000448912 469 ntBASIC14.19□□□□□ -0.14
CSMD3Q7Z407 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC14.19□□□□□ -0.14
CSMD3Q7Z407 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
CSMD3Q7Z407 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
CSMD3Q7Z407 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC14.19□□□□□ -0.14
CSMD3Q7Z407 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
CSMD3Q7Z407 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
CSMD3Q7Z407 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
CSMD3Q7Z407 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CSMD3Q7Z407 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CSMD3Q7Z407 GUK1-204ENST00000366721 689 ntTSL 3 BASIC14.18□□□□□ -0.14
CSMD3Q7Z407 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
CSMD3Q7Z407 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CSMD3Q7Z407 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC14.18□□□□□ -0.14
CSMD3Q7Z407 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC14.18□□□□□ -0.14
CSMD3Q7Z407 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CSMD3Q7Z407 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
CSMD3Q7Z407 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CSMD3Q7Z407 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC14.18□□□□□ -0.14
CSMD3Q7Z407 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
CSMD3Q7Z407 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CSMD3Q7Z407 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC14.18□□□□□ -0.14
CSMD3Q7Z407 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
CSMD3Q7Z407 TSPY8-202ENST00000383000 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
CSMD3Q7Z407 TSPY2-202ENST00000383042 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
CSMD3Q7Z407 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
CSMD3Q7Z407 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
CSMD3Q7Z407 TSPY3-201ENST00000424594 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
CSMD3Q7Z407 TSPY10-202ENST00000444056 1125 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
CSMD3Q7Z407 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
CSMD3Q7Z407 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC14.18□□□□□ -0.14
CSMD3Q7Z407 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CSMD3Q7Z407 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CSMD3Q7Z407 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CSMD3Q7Z407 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CSMD3Q7Z407 FITM1-202ENST00000559294 800 ntBASIC14.18□□□□□ -0.14
CSMD3Q7Z407 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
CSMD3Q7Z407 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
CSMD3Q7Z407 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
CSMD3Q7Z407 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
CSMD3Q7Z407 COPS8-203ENST00000409334 794 ntTSL 5 BASIC14.17□□□□□ -0.14
CSMD3Q7Z407 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 12.1 ms