Protein–RNA interactions for Protein: P56277

CMC4, Cx9C motif-containing protein 4, humanhuman

Predicted RBP Predictions only

Length 68 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CMC4P56277 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC15.12■□□□□ 0.01
CMC4P56277 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
CMC4P56277 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC15.11■□□□□ 0.01
CMC4P56277 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CMC4P56277 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CMC4P56277 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CMC4P56277 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CMC4P56277 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
CMC4P56277 AC007225.1-201ENST00000566331 1836 ntBASIC15.11■□□□□ 0.01
CMC4P56277 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC15.11■□□□□ 0.01
CMC4P56277 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
CMC4P56277 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
CMC4P56277 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC15.11■□□□□ 0.01
CMC4P56277 AL355802.2-201ENST00000402069 882 ntBASIC15.11■□□□□ 0.01
CMC4P56277 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CMC4P56277 GUSBP6-202ENST00000438529 1198 ntBASIC15.11■□□□□ 0.01
CMC4P56277 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC15.11■□□□□ 0.01
CMC4P56277 AC091874.3-201ENST00000512672 1195 ntBASIC15.11■□□□□ 0.01
CMC4P56277 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC15.11■□□□□ 0.01
CMC4P56277 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC15.11■□□□□ 0.01
CMC4P56277 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC15.11■□□□□ 0.01
CMC4P56277 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
CMC4P56277 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CMC4P56277 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC15.11■□□□□ 0.01
CMC4P56277 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
CMC4P56277 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
CMC4P56277 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CMC4P56277 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
CMC4P56277 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
CMC4P56277 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CMC4P56277 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
CMC4P56277 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CMC4P56277 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC15.1■□□□□ 0.01
CMC4P56277 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
CMC4P56277 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CMC4P56277 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CMC4P56277 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC15.1■□□□□ 0.01
CMC4P56277 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
CMC4P56277 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
CMC4P56277 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC15.1■□□□□ 0.01
CMC4P56277 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
CMC4P56277 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC15.1■□□□□ 0.01
CMC4P56277 NME6-213ENST00000451657 871 ntTSL 2 BASIC15.1■□□□□ 0.01
CMC4P56277 RHEB-204ENST00000472642 900 ntTSL 3 BASIC15.1■□□□□ 0.01
CMC4P56277 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
CMC4P56277 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
CMC4P56277 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC15.1■□□□□ 0.01
CMC4P56277 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CMC4P56277 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CMC4P56277 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
CMC4P56277 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CMC4P56277 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC15.1■□□□□ 0.01
CMC4P56277 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC15.1■□□□□ 0.01
CMC4P56277 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
CMC4P56277 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
CMC4P56277 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
CMC4P56277 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC15.09■□□□□ 0.01
CMC4P56277 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CMC4P56277 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
CMC4P56277 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
CMC4P56277 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CMC4P56277 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC15.09■□□□□ 0.01
CMC4P56277 KRT17P1-201ENST00000399211 1546 ntBASIC15.09■□□□□ 0.01
CMC4P56277 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC15.09■□□□□ 0.01
CMC4P56277 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC15.09■□□□□ 0.01
CMC4P56277 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC15.09■□□□□ 0.01
CMC4P56277 HLA-G-202ENST00000376815 851 ntBASIC15.09■□□□□ 0.01
CMC4P56277 HLA-G-203ENST00000376818 1127 ntBASIC15.09■□□□□ 0.01
CMC4P56277 AL390719.1-204ENST00000412397 1219 ntBASIC15.09■□□□□ 0.01
CMC4P56277 DUSP5P2-201ENST00000426873 1033 ntBASIC15.09■□□□□ 0.01
CMC4P56277 EMC9-206ENST00000560403 872 ntTSL 2 BASIC15.09■□□□□ 0.01
CMC4P56277 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
CMC4P56277 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC15.09■□□□□ 0.01
CMC4P56277 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC15.09■□□□□ 0.01
CMC4P56277 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
CMC4P56277 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC15.09■□□□□ 0.01
CMC4P56277 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC15.09■□□□□ 0.01
CMC4P56277 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
CMC4P56277 AC092720.2-201ENST00000602388 1665 ntBASIC15.09■□□□□ 0.01
CMC4P56277 CRK-204ENST00000574295 1391 ntTSL 5 BASIC15.09■□□□□ 0.01
CMC4P56277 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CMC4P56277 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
CMC4P56277 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
CMC4P56277 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC15.09■□□□□ 0.01
CMC4P56277 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC15.08■□□□□ 0.01
CMC4P56277 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC15.08■□□□□ 0.01
CMC4P56277 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC15.08■□□□□ 0.01
CMC4P56277 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
CMC4P56277 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
CMC4P56277 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC15.08■□□□□ 0.01
CMC4P56277 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC15.08■□□□□ 0.01
CMC4P56277 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
CMC4P56277 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC15.08■□□□□ 0
CMC4P56277 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
CMC4P56277 PALM-208ENST00000592155 2272 ntTSL 4 BASIC15.08■□□□□ 0
CMC4P56277 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC15.08■□□□□ 0
CMC4P56277 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC15.08■□□□□ 0
CMC4P56277 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
CMC4P56277 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
CMC4P56277 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC15.08■□□□□ 0
Retrieved 100 of 98,524 protein–RNA pairs in 19.7 ms