Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
RFC3P40938 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC18.55■□□□□ 0.56
RFC3P40938 AL137060.1-201ENST00000618151 2648 ntBASIC18.55■□□□□ 0.56
RFC3P40938 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
RFC3P40938 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
RFC3P40938 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
RFC3P40938 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
RFC3P40938 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
RFC3P40938 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
RFC3P40938 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
RFC3P40938 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
RFC3P40938 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
RFC3P40938 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
RFC3P40938 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC18.55■□□□□ 0.56
RFC3P40938 OR2A1-AS1-207ENST00000486094 819 ntBASIC18.55■□□□□ 0.56
RFC3P40938 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC18.55■□□□□ 0.56
RFC3P40938 SLC29A4P2-201ENST00000504749 1089 ntBASIC18.55■□□□□ 0.56
RFC3P40938 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC18.55■□□□□ 0.56
RFC3P40938 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC18.55■□□□□ 0.56
RFC3P40938 AL356652.1-201ENST00000615962 565 ntBASIC18.55■□□□□ 0.56
RFC3P40938 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
RFC3P40938 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
RFC3P40938 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
RFC3P40938 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
RFC3P40938 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
RFC3P40938 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
RFC3P40938 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC18.55■□□□□ 0.56
RFC3P40938 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
RFC3P40938 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC18.54■□□□□ 0.56
RFC3P40938 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
RFC3P40938 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
RFC3P40938 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
RFC3P40938 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
RFC3P40938 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
RFC3P40938 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
RFC3P40938 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC18.54■□□□□ 0.56
RFC3P40938 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
RFC3P40938 UNC93B4-201ENST00000505679 747 ntBASIC18.54■□□□□ 0.56
RFC3P40938 AC233263.1-201ENST00000578059 224 ntBASIC18.54■□□□□ 0.56
RFC3P40938 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
RFC3P40938 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
RFC3P40938 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
RFC3P40938 STK25-205ENST00000405883 1904 ntTSL 2 BASIC18.54■□□□□ 0.56
RFC3P40938 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC18.54■□□□□ 0.56
RFC3P40938 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
RFC3P40938 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
RFC3P40938 AC011484.1-201ENST00000377652 1995 ntBASIC18.53■□□□□ 0.56
RFC3P40938 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
RFC3P40938 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
RFC3P40938 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC18.53■□□□□ 0.56
RFC3P40938 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC18.53■□□□□ 0.56
RFC3P40938 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
RFC3P40938 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
RFC3P40938 PEX7-202ENST00000367756 680 ntTSL 3 BASIC18.53■□□□□ 0.56
RFC3P40938 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC18.53■□□□□ 0.56
RFC3P40938 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
RFC3P40938 PGM5P4-201ENST00000421970 445 ntBASIC18.53■□□□□ 0.56
RFC3P40938 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC18.53■□□□□ 0.56
RFC3P40938 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC18.53■□□□□ 0.56
RFC3P40938 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC18.53■□□□□ 0.56
RFC3P40938 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC18.53■□□□□ 0.56
RFC3P40938 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC18.53■□□□□ 0.56
RFC3P40938 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
RFC3P40938 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC18.53■□□□□ 0.56
RFC3P40938 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
RFC3P40938 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
RFC3P40938 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC18.53■□□□□ 0.56
RFC3P40938 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
RFC3P40938 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
RFC3P40938 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
RFC3P40938 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
RFC3P40938 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC18.52■□□□□ 0.56
RFC3P40938 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
RFC3P40938 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
RFC3P40938 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC18.52■□□□□ 0.56
RFC3P40938 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC18.52■□□□□ 0.56
RFC3P40938 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.56
RFC3P40938 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.55
RFC3P40938 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.55
RFC3P40938 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC18.51■□□□□ 0.55
RFC3P40938 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
RFC3P40938 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC18.51■□□□□ 0.55
RFC3P40938 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
RFC3P40938 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
RFC3P40938 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC18.51■□□□□ 0.55
RFC3P40938 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
RFC3P40938 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
RFC3P40938 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
RFC3P40938 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
RFC3P40938 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC18.51■□□□□ 0.55
RFC3P40938 STAC-204ENST00000457375 1366 ntTSL 2 BASIC18.51■□□□□ 0.55
RFC3P40938 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
RFC3P40938 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
RFC3P40938 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
RFC3P40938 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
RFC3P40938 AL049796.1-201ENST00000565336 1766 ntBASIC18.5■□□□□ 0.55
RFC3P40938 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
RFC3P40938 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
RFC3P40938 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC18.5■□□□□ 0.55
RFC3P40938 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 20.3 ms