Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC27.03■■□□□ 1.92
COL18A1P39060 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC27.03■■□□□ 1.92
COL18A1P39060 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC27.03■■□□□ 1.92
COL18A1P39060 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC27.03■■□□□ 1.92
COL18A1P39060 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC27.03■■□□□ 1.92
COL18A1P39060 PALM-207ENST00000590161 2137 ntTSL 4 BASIC27.03■■□□□ 1.92
COL18A1P39060 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC27.03■■□□□ 1.92
COL18A1P39060 AL390955.1-201ENST00000428694 934 ntBASIC27.03■■□□□ 1.92
COL18A1P39060 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC27.03■■□□□ 1.92
COL18A1P39060 DECR2-212ENST00000627716 352 ntTSL 2 BASIC27.03■■□□□ 1.92
COL18A1P39060 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC27.03■■□□□ 1.92
COL18A1P39060 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC27.03■■□□□ 1.92
COL18A1P39060 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC27.03■■□□□ 1.92
COL18A1P39060 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC27.03■■□□□ 1.92
COL18A1P39060 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC27.03■■□□□ 1.92
COL18A1P39060 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC27.02■■□□□ 1.92
COL18A1P39060 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC27.02■■□□□ 1.92
COL18A1P39060 AL355355.2-201ENST00000442321 338 ntBASIC27.02■■□□□ 1.92
COL18A1P39060 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC27.02■■□□□ 1.92
COL18A1P39060 TERT-206ENST00000508104 2486 ntTSL 5 BASIC27.02■■□□□ 1.92
COL18A1P39060 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC27.02■■□□□ 1.92
COL18A1P39060 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC27.02■■□□□ 1.92
COL18A1P39060 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC27.02■■□□□ 1.92
COL18A1P39060 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC27.02■■□□□ 1.92
COL18A1P39060 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC27.02■■□□□ 1.92
COL18A1P39060 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC27.02■■□□□ 1.92
COL18A1P39060 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC27.02■■□□□ 1.92
COL18A1P39060 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC27.02■■□□□ 1.92
COL18A1P39060 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC27.02■■□□□ 1.92
COL18A1P39060 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC27.02■■□□□ 1.92
COL18A1P39060 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC27.02■■□□□ 1.92
COL18A1P39060 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC27.01■■□□□ 1.91
COL18A1P39060 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC27.01■■□□□ 1.91
COL18A1P39060 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC27.01■■□□□ 1.91
COL18A1P39060 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC27.01■■□□□ 1.91
COL18A1P39060 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC27.01■■□□□ 1.91
COL18A1P39060 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC27.01■■□□□ 1.91
COL18A1P39060 AP000525.1-201ENST00000608286 694 ntBASIC27.01■■□□□ 1.91
COL18A1P39060 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC27.01■■□□□ 1.91
COL18A1P39060 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC27.01■■□□□ 1.91
COL18A1P39060 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC27.01■■□□□ 1.91
COL18A1P39060 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC27.01■■□□□ 1.91
COL18A1P39060 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC27■■□□□ 1.91
COL18A1P39060 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC27■■□□□ 1.91
COL18A1P39060 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC27■■□□□ 1.91
COL18A1P39060 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC27■■□□□ 1.91
COL18A1P39060 AC073195.1-201ENST00000607241 877 ntBASIC27■■□□□ 1.91
COL18A1P39060 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC27■■□□□ 1.91
COL18A1P39060 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC27■■□□□ 1.91
COL18A1P39060 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC27■■□□□ 1.91
COL18A1P39060 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC26.99■■□□□ 1.91
COL18A1P39060 AC116562.2-201ENST00000507042 360 ntBASIC26.99■■□□□ 1.91
COL18A1P39060 AL031963.3-201ENST00000606441 850 ntBASIC26.99■■□□□ 1.91
COL18A1P39060 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC26.99■■□□□ 1.91
COL18A1P39060 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC26.99■■□□□ 1.91
COL18A1P39060 UNC93B2-201ENST00000285383 730 ntBASIC26.99■■□□□ 1.91
COL18A1P39060 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC26.99■■□□□ 1.91
COL18A1P39060 AC005521.1-201ENST00000393351 872 ntBASIC26.99■■□□□ 1.91
COL18A1P39060 GLDC-219ENST00000640208 420 ntTSL 2 BASIC26.99■■□□□ 1.91
COL18A1P39060 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC26.98■■□□□ 1.91
COL18A1P39060 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC26.98■■□□□ 1.91
COL18A1P39060 PARN-205ENST00000539279 1557 ntTSL 2 BASIC26.98■■□□□ 1.91
COL18A1P39060 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC26.98■■□□□ 1.91
COL18A1P39060 NIFKP9-201ENST00000419265 221 ntBASIC26.98■■□□□ 1.91
COL18A1P39060 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC26.98■■□□□ 1.91
COL18A1P39060 PNN-205ENST00000556530 601 ntTSL 2 BASIC26.98■■□□□ 1.91
COL18A1P39060 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC26.98■■□□□ 1.91
COL18A1P39060 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC26.98■■□□□ 1.91
COL18A1P39060 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC26.98■■□□□ 1.91
COL18A1P39060 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC26.98■■□□□ 1.91
COL18A1P39060 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC26.98■■□□□ 1.91
COL18A1P39060 AC011484.1-201ENST00000377652 1995 ntBASIC26.97■■□□□ 1.91
COL18A1P39060 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC26.97■■□□□ 1.91
COL18A1P39060 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
COL18A1P39060 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC26.97■■□□□ 1.91
COL18A1P39060 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC26.97■■□□□ 1.91
COL18A1P39060 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC26.97■■□□□ 1.91
COL18A1P39060 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC26.97■■□□□ 1.91
COL18A1P39060 GUSBP5-202ENST00000510805 1989 ntBASIC26.97■■□□□ 1.91
COL18A1P39060 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC26.97■■□□□ 1.91
COL18A1P39060 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC26.97■■□□□ 1.91
COL18A1P39060 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC26.97■■□□□ 1.91
COL18A1P39060 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC26.97■■□□□ 1.91
COL18A1P39060 KRT18P57-201ENST00000443599 1254 ntBASIC26.97■■□□□ 1.91
COL18A1P39060 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC26.97■■□□□ 1.91
COL18A1P39060 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC26.97■■□□□ 1.91
COL18A1P39060 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC26.97■■□□□ 1.91
COL18A1P39060 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC26.97■■□□□ 1.91
COL18A1P39060 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC26.96■■□□□ 1.91
COL18A1P39060 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC26.96■■□□□ 1.91
COL18A1P39060 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC26.96■■□□□ 1.91
COL18A1P39060 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC26.96■■□□□ 1.91
COL18A1P39060 CYP2D8P-201ENST00000433633 1490 ntBASIC26.96■■□□□ 1.91
COL18A1P39060 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC26.96■■□□□ 1.91
COL18A1P39060 AC027702.1-201ENST00000563810 1770 ntBASIC26.96■■□□□ 1.91
COL18A1P39060 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC26.96■■□□□ 1.91
COL18A1P39060 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC26.96■■□□□ 1.91
COL18A1P39060 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC26.96■■□□□ 1.91
COL18A1P39060 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC26.96■■□□□ 1.91
COL18A1P39060 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC26.96■■□□□ 1.91
Retrieved 100 of 98,524 protein–RNA pairs in 36.6 ms