Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
BDNFP23560 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC21.39■■□□□ 1.01
BDNFP23560 PRORSD1P-201ENST00000295112 541 ntBASIC21.39■■□□□ 1.01
BDNFP23560 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
BDNFP23560 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
BDNFP23560 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC21.39■■□□□ 1.01
BDNFP23560 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC21.39■■□□□ 1.01
BDNFP23560 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC21.39■■□□□ 1.01
BDNFP23560 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC21.39■■□□□ 1.01
BDNFP23560 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC21.39■■□□□ 1.01
BDNFP23560 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC21.39■■□□□ 1.01
BDNFP23560 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC21.39■■□□□ 1.01
BDNFP23560 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
BDNFP23560 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC21.39■■□□□ 1.01
BDNFP23560 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC21.39■■□□□ 1.01
BDNFP23560 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC21.39■■□□□ 1.01
BDNFP23560 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC21.39■■□□□ 1.01
BDNFP23560 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
BDNFP23560 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
BDNFP23560 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC21.38■■□□□ 1.01
BDNFP23560 PALM-208ENST00000592155 2272 ntTSL 4 BASIC21.38■■□□□ 1.01
BDNFP23560 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
BDNFP23560 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
BDNFP23560 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
BDNFP23560 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
BDNFP23560 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC21.38■■□□□ 1.01
BDNFP23560 AC128676.1-201ENST00000454392 318 ntBASIC21.38■■□□□ 1.01
BDNFP23560 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC21.38■■□□□ 1.01
BDNFP23560 AC008687.6-201ENST00000596318 630 ntBASIC21.38■■□□□ 1.01
BDNFP23560 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC21.38■■□□□ 1.01
BDNFP23560 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
BDNFP23560 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC21.38■■□□□ 1.01
BDNFP23560 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC21.38■■□□□ 1.01
BDNFP23560 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC21.38■■□□□ 1.01
BDNFP23560 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
BDNFP23560 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC21.37■■□□□ 1.01
BDNFP23560 AC007225.1-201ENST00000566331 1836 ntBASIC21.37■■□□□ 1.01
BDNFP23560 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
BDNFP23560 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
BDNFP23560 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
BDNFP23560 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
BDNFP23560 GGT1-206ENST00000404223 952 ntTSL 2 BASIC21.37■■□□□ 1.01
BDNFP23560 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC21.37■■□□□ 1.01
BDNFP23560 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC21.37■■□□□ 1.01
BDNFP23560 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
BDNFP23560 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
BDNFP23560 AC006557.6-201ENST00000623071 864 ntBASIC21.37■■□□□ 1.01
BDNFP23560 AC073648.6-201ENST00000641589 218 ntBASIC21.37■■□□□ 1.01
BDNFP23560 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
BDNFP23560 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC21.37■■□□□ 1.01
BDNFP23560 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
BDNFP23560 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC21.37■■□□□ 1.01
BDNFP23560 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
BDNFP23560 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
BDNFP23560 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
BDNFP23560 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
BDNFP23560 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC21.36■■□□□ 1.01
BDNFP23560 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC21.36■■□□□ 1.01
BDNFP23560 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
BDNFP23560 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
BDNFP23560 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC21.36■■□□□ 1.01
BDNFP23560 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
BDNFP23560 AC005829.2-201ENST00000571422 1056 ntBASIC21.36■■□□□ 1.01
BDNFP23560 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC21.36■■□□□ 1.01
BDNFP23560 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC21.36■■□□□ 1.01
BDNFP23560 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC21.36■■□□□ 1.01
BDNFP23560 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
BDNFP23560 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
BDNFP23560 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
BDNFP23560 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
BDNFP23560 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC21.36■■□□□ 1.01
BDNFP23560 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC21.36■■□□□ 1.01
BDNFP23560 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC21.35■■□□□ 1.01
BDNFP23560 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC21.35■■□□□ 1.01
BDNFP23560 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
BDNFP23560 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC21.35■■□□□ 1.01
BDNFP23560 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC21.35■■□□□ 1.01
BDNFP23560 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC21.35■■□□□ 1.01
BDNFP23560 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
BDNFP23560 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC21.35■■□□□ 1.01
BDNFP23560 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC21.35■■□□□ 1.01
BDNFP23560 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
BDNFP23560 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC21.35■■□□□ 1.01
BDNFP23560 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
BDNFP23560 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
BDNFP23560 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
BDNFP23560 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC21.35■■□□□ 1.01
BDNFP23560 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
BDNFP23560 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC21.35■■□□□ 1.01
BDNFP23560 IRX5-204ENST00000560154 879 ntTSL 5 BASIC21.35■■□□□ 1.01
BDNFP23560 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
BDNFP23560 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC21.35■■□□□ 1.01
BDNFP23560 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC21.35■■□□□ 1.01
BDNFP23560 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
BDNFP23560 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC21.35■■□□□ 1.01
BDNFP23560 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
BDNFP23560 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC21.35■■□□□ 1.01
BDNFP23560 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
BDNFP23560 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
BDNFP23560 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC21.35■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 25.3 ms