Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC19.51■□□□□ 0.71
LDLRP01130 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
LDLRP01130 BID-204ENST00000399767 2129 ntTSL 2 BASIC19.51■□□□□ 0.71
LDLRP01130 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
LDLRP01130 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
LDLRP01130 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
LDLRP01130 AC007225.1-201ENST00000566331 1836 ntBASIC19.51■□□□□ 0.71
LDLRP01130 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
LDLRP01130 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
LDLRP01130 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
LDLRP01130 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
LDLRP01130 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
LDLRP01130 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
LDLRP01130 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC19.5■□□□□ 0.71
LDLRP01130 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC19.5■□□□□ 0.71
LDLRP01130 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC19.5■□□□□ 0.71
LDLRP01130 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC19.5■□□□□ 0.71
LDLRP01130 MAZ-216ENST00000616501 991 ntTSL 5 BASIC19.5■□□□□ 0.71
LDLRP01130 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC19.5■□□□□ 0.71
LDLRP01130 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC19.5■□□□□ 0.71
LDLRP01130 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
LDLRP01130 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
LDLRP01130 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
LDLRP01130 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
LDLRP01130 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC19.5■□□□□ 0.71
LDLRP01130 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
LDLRP01130 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
LDLRP01130 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
LDLRP01130 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC19.5■□□□□ 0.71
LDLRP01130 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC19.5■□□□□ 0.71
LDLRP01130 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
LDLRP01130 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC19.49■□□□□ 0.71
LDLRP01130 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
LDLRP01130 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
LDLRP01130 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC19.49■□□□□ 0.71
LDLRP01130 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC19.49■□□□□ 0.71
LDLRP01130 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
LDLRP01130 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
LDLRP01130 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
LDLRP01130 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
LDLRP01130 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
LDLRP01130 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC19.49■□□□□ 0.71
LDLRP01130 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
LDLRP01130 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
LDLRP01130 RGMA-211ENST00000557420 989 ntTSL 3 BASIC19.49■□□□□ 0.71
LDLRP01130 AL138781.1-201ENST00000566567 1274 ntBASIC19.49■□□□□ 0.71
LDLRP01130 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC19.49■□□□□ 0.71
LDLRP01130 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC19.49■□□□□ 0.71
LDLRP01130 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
LDLRP01130 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
LDLRP01130 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC19.49■□□□□ 0.71
LDLRP01130 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
LDLRP01130 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
LDLRP01130 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
LDLRP01130 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
LDLRP01130 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC19.48■□□□□ 0.71
LDLRP01130 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
LDLRP01130 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC19.48■□□□□ 0.71
LDLRP01130 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC19.48■□□□□ 0.71
LDLRP01130 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
LDLRP01130 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
LDLRP01130 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC19.48■□□□□ 0.71
LDLRP01130 METTL15-202ENST00000403099 795 ntTSL 5 BASIC19.48■□□□□ 0.71
LDLRP01130 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC19.48■□□□□ 0.71
LDLRP01130 AC231657.2-201ENST00000624556 255 ntBASIC19.48■□□□□ 0.71
LDLRP01130 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
LDLRP01130 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
LDLRP01130 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
LDLRP01130 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
LDLRP01130 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC19.48■□□□□ 0.71
LDLRP01130 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
LDLRP01130 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC19.47■□□□□ 0.71
LDLRP01130 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
LDLRP01130 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC19.47■□□□□ 0.71
LDLRP01130 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC19.47■□□□□ 0.71
LDLRP01130 NARF-205ENST00000412079 1760 ntTSL 5 BASIC19.47■□□□□ 0.71
LDLRP01130 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC19.47■□□□□ 0.71
LDLRP01130 DET1-207ENST00000564406 2315 ntTSL 2 BASIC19.47■□□□□ 0.71
LDLRP01130 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC19.47■□□□□ 0.71
LDLRP01130 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
LDLRP01130 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
LDLRP01130 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
LDLRP01130 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC19.47■□□□□ 0.71
LDLRP01130 SLC29A4P1-201ENST00000398760 971 ntBASIC19.47■□□□□ 0.71
LDLRP01130 AC069152.1-201ENST00000438030 544 ntBASIC19.47■□□□□ 0.71
LDLRP01130 OAS3-207ENST00000551007 998 ntTSL 2 BASIC19.47■□□□□ 0.71
LDLRP01130 AC008687.6-201ENST00000596318 630 ntBASIC19.47■□□□□ 0.71
LDLRP01130 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC19.47■□□□□ 0.71
LDLRP01130 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
LDLRP01130 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC19.47■□□□□ 0.71
LDLRP01130 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
LDLRP01130 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC19.47■□□□□ 0.71
LDLRP01130 USP39-204ENST00000409766 2033 ntTSL 2 BASIC19.47■□□□□ 0.71
LDLRP01130 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
LDLRP01130 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
LDLRP01130 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
LDLRP01130 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC19.46■□□□□ 0.71
LDLRP01130 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
LDLRP01130 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC19.46■□□□□ 0.71
LDLRP01130 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC19.46■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms