Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
SLC28A1O00337 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SLC28A1O00337 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC19.51■□□□□ 0.71
SLC28A1O00337 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
SLC28A1O00337 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC19.51■□□□□ 0.71
SLC28A1O00337 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC19.51■□□□□ 0.71
SLC28A1O00337 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SLC28A1O00337 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
SLC28A1O00337 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
SLC28A1O00337 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SLC28A1O00337 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
SLC28A1O00337 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
SLC28A1O00337 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
SLC28A1O00337 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SLC28A1O00337 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
SLC28A1O00337 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC19.5■□□□□ 0.71
SLC28A1O00337 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
SLC28A1O00337 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SLC28A1O00337 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC19.5■□□□□ 0.71
SLC28A1O00337 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
SLC28A1O00337 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
SLC28A1O00337 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC19.5■□□□□ 0.71
SLC28A1O00337 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SLC28A1O00337 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC19.5■□□□□ 0.71
SLC28A1O00337 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC19.5■□□□□ 0.71
SLC28A1O00337 DPP3P2-201ENST00000416030 1696 ntBASIC19.49■□□□□ 0.71
SLC28A1O00337 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC19.49■□□□□ 0.71
SLC28A1O00337 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
SLC28A1O00337 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SLC28A1O00337 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC19.49■□□□□ 0.71
SLC28A1O00337 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
SLC28A1O00337 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SLC28A1O00337 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
SLC28A1O00337 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC19.49■□□□□ 0.71
SLC28A1O00337 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC19.49■□□□□ 0.71
SLC28A1O00337 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SLC28A1O00337 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC19.49■□□□□ 0.71
SLC28A1O00337 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC19.49■□□□□ 0.71
SLC28A1O00337 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC19.49■□□□□ 0.71
SLC28A1O00337 MYCNOS-205ENST00000641950 531 ntBASIC19.49■□□□□ 0.71
SLC28A1O00337 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC19.49■□□□□ 0.71
SLC28A1O00337 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC19.49■□□□□ 0.71
SLC28A1O00337 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC19.49■□□□□ 0.71
SLC28A1O00337 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
SLC28A1O00337 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SLC28A1O00337 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC19.49■□□□□ 0.71
SLC28A1O00337 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC19.49■□□□□ 0.71
SLC28A1O00337 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SLC28A1O00337 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
SLC28A1O00337 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
SLC28A1O00337 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SLC28A1O00337 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC19.49■□□□□ 0.71
SLC28A1O00337 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SLC28A1O00337 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC19.48■□□□□ 0.71
SLC28A1O00337 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
SLC28A1O00337 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
SLC28A1O00337 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC19.48■□□□□ 0.71
SLC28A1O00337 PARP1-202ENST00000366792 553 ntTSL 3 BASIC19.48■□□□□ 0.71
SLC28A1O00337 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
SLC28A1O00337 PGM5P4-201ENST00000421970 445 ntBASIC19.48■□□□□ 0.71
SLC28A1O00337 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC19.48■□□□□ 0.71
SLC28A1O00337 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC19.48■□□□□ 0.71
SLC28A1O00337 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
SLC28A1O00337 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC19.48■□□□□ 0.71
SLC28A1O00337 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
SLC28A1O00337 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SLC28A1O00337 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC19.48■□□□□ 0.71
SLC28A1O00337 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
SLC28A1O00337 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC19.48■□□□□ 0.71
SLC28A1O00337 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC19.47■□□□□ 0.71
SLC28A1O00337 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC19.47■□□□□ 0.71
SLC28A1O00337 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
SLC28A1O00337 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
SLC28A1O00337 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SLC28A1O00337 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC19.47■□□□□ 0.71
SLC28A1O00337 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SLC28A1O00337 GUK1-205ENST00000366722 850 ntTSL 3 BASIC19.47■□□□□ 0.71
SLC28A1O00337 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC19.47■□□□□ 0.71
SLC28A1O00337 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SLC28A1O00337 KRT18P61-201ENST00000585825 1298 ntBASIC19.47■□□□□ 0.71
SLC28A1O00337 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC19.47■□□□□ 0.71
SLC28A1O00337 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
SLC28A1O00337 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SLC28A1O00337 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC19.47■□□□□ 0.71
SLC28A1O00337 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
SLC28A1O00337 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
SLC28A1O00337 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC19.47■□□□□ 0.71
SLC28A1O00337 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SLC28A1O00337 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SLC28A1O00337 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC19.46■□□□□ 0.71
SLC28A1O00337 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SLC28A1O00337 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
SLC28A1O00337 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC19.46■□□□□ 0.71
SLC28A1O00337 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC19.46■□□□□ 0.71
SLC28A1O00337 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC19.46■□□□□ 0.71
SLC28A1O00337 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC19.46■□□□□ 0.71
SLC28A1O00337 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
SLC28A1O00337 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC19.46■□□□□ 0.71
SLC28A1O00337 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
SLC28A1O00337 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC19.46■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms