Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC27.28■■□□□ 1.96
SENP3-EIF4A1A0A087X0R7 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC27.28■■□□□ 1.96
SENP3-EIF4A1A0A087X0R7 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC27.28■■□□□ 1.96
SENP3-EIF4A1A0A087X0R7 AL512408.1-201ENST00000569378 2000 ntBASIC27.28■■□□□ 1.96
SENP3-EIF4A1A0A087X0R7 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
SENP3-EIF4A1A0A087X0R7 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC27.28■■□□□ 1.96
SENP3-EIF4A1A0A087X0R7 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC27.28■■□□□ 1.96
SENP3-EIF4A1A0A087X0R7 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC27.28■■□□□ 1.96
SENP3-EIF4A1A0A087X0R7 PTPA-214ENST00000423100 988 ntTSL 2 BASIC27.28■■□□□ 1.96
SENP3-EIF4A1A0A087X0R7 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC27.28■■□□□ 1.96
SENP3-EIF4A1A0A087X0R7 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC27.28■■□□□ 1.96
SENP3-EIF4A1A0A087X0R7 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC27.28■■□□□ 1.96
SENP3-EIF4A1A0A087X0R7 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC27.28■■□□□ 1.96
SENP3-EIF4A1A0A087X0R7 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
SENP3-EIF4A1A0A087X0R7 AC016405.3-201ENST00000607710 860 ntBASIC27.28■■□□□ 1.96
SENP3-EIF4A1A0A087X0R7 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC27.28■■□□□ 1.96
SENP3-EIF4A1A0A087X0R7 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC27.28■■□□□ 1.96
SENP3-EIF4A1A0A087X0R7 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC27.28■■□□□ 1.96
SENP3-EIF4A1A0A087X0R7 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC27.28■■□□□ 1.96
SENP3-EIF4A1A0A087X0R7 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC27.28■■□□□ 1.96
SENP3-EIF4A1A0A087X0R7 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
SENP3-EIF4A1A0A087X0R7 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC27.27■■□□□ 1.96
SENP3-EIF4A1A0A087X0R7 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC27.27■■□□□ 1.96
SENP3-EIF4A1A0A087X0R7 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC27.27■■□□□ 1.96
SENP3-EIF4A1A0A087X0R7 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC27.27■■□□□ 1.96
SENP3-EIF4A1A0A087X0R7 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC27.27■■□□□ 1.96
SENP3-EIF4A1A0A087X0R7 AC010536.3-201ENST00000620306 533 ntBASIC27.27■■□□□ 1.96
SENP3-EIF4A1A0A087X0R7 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC27.27■■□□□ 1.96
SENP3-EIF4A1A0A087X0R7 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
SENP3-EIF4A1A0A087X0R7 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC27.27■■□□□ 1.96
SENP3-EIF4A1A0A087X0R7 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC27.27■■□□□ 1.96
SENP3-EIF4A1A0A087X0R7 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.96
SENP3-EIF4A1A0A087X0R7 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC27.26■■□□□ 1.95
SENP3-EIF4A1A0A087X0R7 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC27.26■■□□□ 1.95
SENP3-EIF4A1A0A087X0R7 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC27.26■■□□□ 1.95
SENP3-EIF4A1A0A087X0R7 STAC-204ENST00000457375 1366 ntTSL 2 BASIC27.26■■□□□ 1.95
SENP3-EIF4A1A0A087X0R7 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC27.26■■□□□ 1.95
SENP3-EIF4A1A0A087X0R7 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.95
SENP3-EIF4A1A0A087X0R7 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC27.26■■□□□ 1.95
SENP3-EIF4A1A0A087X0R7 RNA5SP413-201ENST00000516373 109 ntBASIC27.26■■□□□ 1.95
SENP3-EIF4A1A0A087X0R7 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC27.26■■□□□ 1.95
SENP3-EIF4A1A0A087X0R7 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.95
SENP3-EIF4A1A0A087X0R7 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC27.26■■□□□ 1.95
SENP3-EIF4A1A0A087X0R7 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC27.26■■□□□ 1.95
SENP3-EIF4A1A0A087X0R7 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC27.26■■□□□ 1.95
SENP3-EIF4A1A0A087X0R7 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.95
SENP3-EIF4A1A0A087X0R7 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.95
SENP3-EIF4A1A0A087X0R7 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC27.26■■□□□ 1.95
SENP3-EIF4A1A0A087X0R7 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC27.26■■□□□ 1.95
SENP3-EIF4A1A0A087X0R7 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC27.26■■□□□ 1.95
SENP3-EIF4A1A0A087X0R7 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC27.25■■□□□ 1.95
SENP3-EIF4A1A0A087X0R7 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC27.25■■□□□ 1.95
SENP3-EIF4A1A0A087X0R7 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC27.25■■□□□ 1.95
SENP3-EIF4A1A0A087X0R7 KRT18P20-201ENST00000548986 1279 ntBASIC27.25■■□□□ 1.95
SENP3-EIF4A1A0A087X0R7 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC27.25■■□□□ 1.95
SENP3-EIF4A1A0A087X0R7 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC27.25■■□□□ 1.95
SENP3-EIF4A1A0A087X0R7 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC27.25■■□□□ 1.95
SENP3-EIF4A1A0A087X0R7 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC27.25■■□□□ 1.95
SENP3-EIF4A1A0A087X0R7 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC27.24■■□□□ 1.95
SENP3-EIF4A1A0A087X0R7 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC27.24■■□□□ 1.95
SENP3-EIF4A1A0A087X0R7 DET1-207ENST00000564406 2315 ntTSL 2 BASIC27.24■■□□□ 1.95
SENP3-EIF4A1A0A087X0R7 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC27.24■■□□□ 1.95
SENP3-EIF4A1A0A087X0R7 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC27.24■■□□□ 1.95
SENP3-EIF4A1A0A087X0R7 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC27.24■■□□□ 1.95
SENP3-EIF4A1A0A087X0R7 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC27.24■■□□□ 1.95
SENP3-EIF4A1A0A087X0R7 CNN2P6-201ENST00000439038 900 ntBASIC27.24■■□□□ 1.95
SENP3-EIF4A1A0A087X0R7 DUX4L16-201ENST00000555130 1264 ntBASIC27.24■■□□□ 1.95
SENP3-EIF4A1A0A087X0R7 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC27.24■■□□□ 1.95
SENP3-EIF4A1A0A087X0R7 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC27.24■■□□□ 1.95
SENP3-EIF4A1A0A087X0R7 MAZ-216ENST00000616501 991 ntTSL 5 BASIC27.24■■□□□ 1.95
SENP3-EIF4A1A0A087X0R7 AC073912.3-201ENST00000624414 853 ntBASIC27.24■■□□□ 1.95
SENP3-EIF4A1A0A087X0R7 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC27.24■■□□□ 1.95
SENP3-EIF4A1A0A087X0R7 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC27.24■■□□□ 1.95
SENP3-EIF4A1A0A087X0R7 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC27.23■■□□□ 1.95
SENP3-EIF4A1A0A087X0R7 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC27.23■■□□□ 1.95
SENP3-EIF4A1A0A087X0R7 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC27.23■■□□□ 1.95
SENP3-EIF4A1A0A087X0R7 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC27.23■■□□□ 1.95
SENP3-EIF4A1A0A087X0R7 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC27.23■■□□□ 1.95
SENP3-EIF4A1A0A087X0R7 TERF1P5-201ENST00000477545 1207 ntBASIC27.23■■□□□ 1.95
SENP3-EIF4A1A0A087X0R7 IRX5-204ENST00000560154 879 ntTSL 5 BASIC27.23■■□□□ 1.95
SENP3-EIF4A1A0A087X0R7 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC27.23■■□□□ 1.95
SENP3-EIF4A1A0A087X0R7 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC27.23■■□□□ 1.95
SENP3-EIF4A1A0A087X0R7 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC27.23■■□□□ 1.95
SENP3-EIF4A1A0A087X0R7 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC27.23■■□□□ 1.95
SENP3-EIF4A1A0A087X0R7 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC27.23■■□□□ 1.95
SENP3-EIF4A1A0A087X0R7 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC27.23■■□□□ 1.95
SENP3-EIF4A1A0A087X0R7 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC27.23■■□□□ 1.95
SENP3-EIF4A1A0A087X0R7 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
SENP3-EIF4A1A0A087X0R7 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC27.22■■□□□ 1.95
SENP3-EIF4A1A0A087X0R7 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
SENP3-EIF4A1A0A087X0R7 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC27.22■■□□□ 1.95
SENP3-EIF4A1A0A087X0R7 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC27.22■■□□□ 1.95
SENP3-EIF4A1A0A087X0R7 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC27.22■■□□□ 1.95
SENP3-EIF4A1A0A087X0R7 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC27.22■■□□□ 1.95
SENP3-EIF4A1A0A087X0R7 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC27.22■■□□□ 1.95
SENP3-EIF4A1A0A087X0R7 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC27.22■■□□□ 1.95
SENP3-EIF4A1A0A087X0R7 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC27.22■■□□□ 1.95
SENP3-EIF4A1A0A087X0R7 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
SENP3-EIF4A1A0A087X0R7 SMG8-203ENST00000578922 2178 ntBASIC27.22■■□□□ 1.95
SENP3-EIF4A1A0A087X0R7 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
Retrieved 100 of 98,524 protein–RNA pairs in 20.2 ms