Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC18.33■□□□□ 0.52
HIF3AQ9Y2N7 FAM21FP-204ENST00000608637 956 ntBASIC18.33■□□□□ 0.52
HIF3AQ9Y2N7 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
HIF3AQ9Y2N7 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC18.33■□□□□ 0.52
HIF3AQ9Y2N7 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC18.33■□□□□ 0.52
HIF3AQ9Y2N7 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
HIF3AQ9Y2N7 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
HIF3AQ9Y2N7 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
HIF3AQ9Y2N7 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC18.33■□□□□ 0.52
HIF3AQ9Y2N7 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC18.33■□□□□ 0.52
HIF3AQ9Y2N7 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
HIF3AQ9Y2N7 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
HIF3AQ9Y2N7 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC18.32■□□□□ 0.52
HIF3AQ9Y2N7 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC18.32■□□□□ 0.52
HIF3AQ9Y2N7 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
HIF3AQ9Y2N7 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC18.32■□□□□ 0.52
HIF3AQ9Y2N7 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
HIF3AQ9Y2N7 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
HIF3AQ9Y2N7 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC18.32■□□□□ 0.52
HIF3AQ9Y2N7 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
HIF3AQ9Y2N7 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC18.32■□□□□ 0.52
HIF3AQ9Y2N7 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC18.32■□□□□ 0.52
HIF3AQ9Y2N7 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC18.32■□□□□ 0.52
HIF3AQ9Y2N7 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
HIF3AQ9Y2N7 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
HIF3AQ9Y2N7 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
HIF3AQ9Y2N7 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
HIF3AQ9Y2N7 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC18.32■□□□□ 0.52
HIF3AQ9Y2N7 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
HIF3AQ9Y2N7 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
HIF3AQ9Y2N7 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
HIF3AQ9Y2N7 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
HIF3AQ9Y2N7 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
HIF3AQ9Y2N7 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC18.32■□□□□ 0.52
HIF3AQ9Y2N7 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HIF3AQ9Y2N7 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HIF3AQ9Y2N7 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC18.31■□□□□ 0.52
HIF3AQ9Y2N7 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC18.31■□□□□ 0.52
HIF3AQ9Y2N7 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
HIF3AQ9Y2N7 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC18.31■□□□□ 0.52
HIF3AQ9Y2N7 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC18.31■□□□□ 0.52
HIF3AQ9Y2N7 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
HIF3AQ9Y2N7 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HIF3AQ9Y2N7 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
HIF3AQ9Y2N7 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC18.31■□□□□ 0.52
HIF3AQ9Y2N7 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
HIF3AQ9Y2N7 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC18.31■□□□□ 0.52
HIF3AQ9Y2N7 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HIF3AQ9Y2N7 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC18.31■□□□□ 0.52
HIF3AQ9Y2N7 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
HIF3AQ9Y2N7 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HIF3AQ9Y2N7 AL391422.3-201ENST00000603791 2761 ntBASIC18.31■□□□□ 0.52
HIF3AQ9Y2N7 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HIF3AQ9Y2N7 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
HIF3AQ9Y2N7 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC18.31■□□□□ 0.52
HIF3AQ9Y2N7 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
HIF3AQ9Y2N7 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
HIF3AQ9Y2N7 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
HIF3AQ9Y2N7 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
HIF3AQ9Y2N7 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC18.31■□□□□ 0.52
HIF3AQ9Y2N7 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC18.3■□□□□ 0.52
HIF3AQ9Y2N7 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
HIF3AQ9Y2N7 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC18.3■□□□□ 0.52
HIF3AQ9Y2N7 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
HIF3AQ9Y2N7 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
HIF3AQ9Y2N7 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC18.3■□□□□ 0.52
HIF3AQ9Y2N7 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
HIF3AQ9Y2N7 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC18.3■□□□□ 0.52
HIF3AQ9Y2N7 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
HIF3AQ9Y2N7 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
HIF3AQ9Y2N7 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
HIF3AQ9Y2N7 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
HIF3AQ9Y2N7 TERF1P5-201ENST00000477545 1207 ntBASIC18.3■□□□□ 0.52
HIF3AQ9Y2N7 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC18.3■□□□□ 0.52
HIF3AQ9Y2N7 AC010536.3-201ENST00000620306 533 ntBASIC18.3■□□□□ 0.52
HIF3AQ9Y2N7 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC18.3■□□□□ 0.52
HIF3AQ9Y2N7 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC18.3■□□□□ 0.52
HIF3AQ9Y2N7 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
HIF3AQ9Y2N7 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
HIF3AQ9Y2N7 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC18.3■□□□□ 0.52
HIF3AQ9Y2N7 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
HIF3AQ9Y2N7 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC18.3■□□□□ 0.52
HIF3AQ9Y2N7 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC18.29■□□□□ 0.52
HIF3AQ9Y2N7 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC18.29■□□□□ 0.52
HIF3AQ9Y2N7 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
HIF3AQ9Y2N7 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
HIF3AQ9Y2N7 KRT18P11-201ENST00000435214 1283 ntBASIC18.29■□□□□ 0.52
HIF3AQ9Y2N7 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
HIF3AQ9Y2N7 BRI3-207ENST00000539286 699 ntTSL 2 BASIC18.29■□□□□ 0.52
HIF3AQ9Y2N7 DBI-210ENST00000542275 757 ntTSL 5 BASIC18.29■□□□□ 0.52
HIF3AQ9Y2N7 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC18.29■□□□□ 0.52
HIF3AQ9Y2N7 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC18.29■□□□□ 0.52
HIF3AQ9Y2N7 AC087623.3-201ENST00000607047 1098 ntBASIC18.29■□□□□ 0.52
HIF3AQ9Y2N7 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC18.29■□□□□ 0.52
HIF3AQ9Y2N7 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
HIF3AQ9Y2N7 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
HIF3AQ9Y2N7 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC18.29■□□□□ 0.52
HIF3AQ9Y2N7 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
HIF3AQ9Y2N7 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC18.29■□□□□ 0.52
HIF3AQ9Y2N7 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 23 ms