Protein–RNA interactions for Protein: Q9UIU6

SIX4, Homeobox protein SIX4, humanhuman

Predictions only

Length 781 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4Q9UIU6 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC21.78■■□□□ 1.08
SIX4Q9UIU6 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC21.78■■□□□ 1.08
SIX4Q9UIU6 SERP1-205ENST00000487153 657 ntTSL 4 BASIC21.78■■□□□ 1.08
SIX4Q9UIU6 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC21.78■■□□□ 1.08
SIX4Q9UIU6 RNA5SP413-201ENST00000516373 109 ntBASIC21.78■■□□□ 1.08
SIX4Q9UIU6 INO80E-214ENST00000620599 515 ntTSL 2 BASIC21.78■■□□□ 1.08
SIX4Q9UIU6 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
SIX4Q9UIU6 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
SIX4Q9UIU6 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC21.78■■□□□ 1.08
SIX4Q9UIU6 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
SIX4Q9UIU6 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC21.78■■□□□ 1.08
SIX4Q9UIU6 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC21.78■■□□□ 1.08
SIX4Q9UIU6 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC21.78■■□□□ 1.08
SIX4Q9UIU6 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
SIX4Q9UIU6 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC21.77■■□□□ 1.08
SIX4Q9UIU6 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC21.77■■□□□ 1.08
SIX4Q9UIU6 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC21.77■■□□□ 1.08
SIX4Q9UIU6 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC21.77■■□□□ 1.08
SIX4Q9UIU6 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
SIX4Q9UIU6 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC21.77■■□□□ 1.08
SIX4Q9UIU6 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC21.77■■□□□ 1.08
SIX4Q9UIU6 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
SIX4Q9UIU6 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC21.77■■□□□ 1.08
SIX4Q9UIU6 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
SIX4Q9UIU6 MIR4651-201ENST00000582622 73 ntBASIC21.77■■□□□ 1.08
SIX4Q9UIU6 HLA-B-256ENST00000639848 1089 ntBASIC21.77■■□□□ 1.08
SIX4Q9UIU6 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
SIX4Q9UIU6 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC21.77■■□□□ 1.08
SIX4Q9UIU6 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC21.77■■□□□ 1.08
SIX4Q9UIU6 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
SIX4Q9UIU6 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC21.77■■□□□ 1.08
SIX4Q9UIU6 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
SIX4Q9UIU6 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
SIX4Q9UIU6 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC21.77■■□□□ 1.07
SIX4Q9UIU6 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC21.76■■□□□ 1.07
SIX4Q9UIU6 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC21.76■■□□□ 1.07
SIX4Q9UIU6 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
SIX4Q9UIU6 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
SIX4Q9UIU6 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
SIX4Q9UIU6 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
SIX4Q9UIU6 CRK-204ENST00000574295 1391 ntTSL 5 BASIC21.76■■□□□ 1.07
SIX4Q9UIU6 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
SIX4Q9UIU6 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC21.76■■□□□ 1.07
SIX4Q9UIU6 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC21.76■■□□□ 1.07
SIX4Q9UIU6 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
SIX4Q9UIU6 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC21.76■■□□□ 1.07
SIX4Q9UIU6 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC21.76■■□□□ 1.07
SIX4Q9UIU6 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC21.76■■□□□ 1.07
SIX4Q9UIU6 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC21.76■■□□□ 1.07
SIX4Q9UIU6 TBCB-214ENST00000629269 413 ntTSL 5 BASIC21.76■■□□□ 1.07
SIX4Q9UIU6 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
SIX4Q9UIU6 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC21.76■■□□□ 1.07
SIX4Q9UIU6 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
SIX4Q9UIU6 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC21.76■■□□□ 1.07
SIX4Q9UIU6 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
SIX4Q9UIU6 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
SIX4Q9UIU6 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
SIX4Q9UIU6 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC21.75■■□□□ 1.07
SIX4Q9UIU6 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
SIX4Q9UIU6 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
SIX4Q9UIU6 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
SIX4Q9UIU6 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
SIX4Q9UIU6 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC21.75■■□□□ 1.07
SIX4Q9UIU6 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC21.75■■□□□ 1.07
SIX4Q9UIU6 AC060766.5-201ENST00000590539 871 ntBASIC21.75■■□□□ 1.07
SIX4Q9UIU6 PTBP1P-201ENST00000554374 1601 ntBASIC21.75■■□□□ 1.07
SIX4Q9UIU6 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
SIX4Q9UIU6 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
SIX4Q9UIU6 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC21.75■■□□□ 1.07
SIX4Q9UIU6 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC21.75■■□□□ 1.07
SIX4Q9UIU6 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
SIX4Q9UIU6 AC073314.1-201ENST00000568729 2216 ntBASIC21.75■■□□□ 1.07
SIX4Q9UIU6 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC21.75■■□□□ 1.07
SIX4Q9UIU6 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
SIX4Q9UIU6 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC21.74■■□□□ 1.07
SIX4Q9UIU6 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
SIX4Q9UIU6 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC21.74■■□□□ 1.07
SIX4Q9UIU6 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
SIX4Q9UIU6 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC21.74■■□□□ 1.07
SIX4Q9UIU6 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
SIX4Q9UIU6 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC21.74■■□□□ 1.07
SIX4Q9UIU6 SLC29A4P2-201ENST00000504749 1089 ntBASIC21.74■■□□□ 1.07
SIX4Q9UIU6 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
SIX4Q9UIU6 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC21.74■■□□□ 1.07
SIX4Q9UIU6 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC21.74■■□□□ 1.07
SIX4Q9UIU6 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC21.74■■□□□ 1.07
SIX4Q9UIU6 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
SIX4Q9UIU6 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
SIX4Q9UIU6 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC21.74■■□□□ 1.07
SIX4Q9UIU6 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
SIX4Q9UIU6 H19-201ENST00000411754 1788 ntTSL 5 BASIC21.74■■□□□ 1.07
SIX4Q9UIU6 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC21.74■■□□□ 1.07
SIX4Q9UIU6 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC21.73■■□□□ 1.07
SIX4Q9UIU6 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
SIX4Q9UIU6 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
SIX4Q9UIU6 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC21.73■■□□□ 1.07
SIX4Q9UIU6 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC21.73■■□□□ 1.07
SIX4Q9UIU6 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC21.73■■□□□ 1.07
SIX4Q9UIU6 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
SIX4Q9UIU6 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 37.6 ms