Protein–RNA interactions for Protein: Q9UBQ0

VPS29, Vacuolar protein sorting-associated protein 29, humanhuman

Predictions only

Length 182 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29Q9UBQ0 AC112229.1-201ENST00000639295 961 ntBASIC19.48■□□□□ 0.71
VPS29Q9UBQ0 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC19.48■□□□□ 0.71
VPS29Q9UBQ0 AC099778.1-201ENST00000568593 1911 ntBASIC19.48■□□□□ 0.71
VPS29Q9UBQ0 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC19.48■□□□□ 0.71
VPS29Q9UBQ0 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC19.47■□□□□ 0.71
VPS29Q9UBQ0 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
VPS29Q9UBQ0 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
VPS29Q9UBQ0 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC19.47■□□□□ 0.71
VPS29Q9UBQ0 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC19.47■□□□□ 0.71
VPS29Q9UBQ0 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
VPS29Q9UBQ0 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
VPS29Q9UBQ0 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
VPS29Q9UBQ0 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC19.47■□□□□ 0.71
VPS29Q9UBQ0 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC19.47■□□□□ 0.71
VPS29Q9UBQ0 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
VPS29Q9UBQ0 UQCRFS1P1-201ENST00000435169 820 ntBASIC19.47■□□□□ 0.71
VPS29Q9UBQ0 AC007322.4-201ENST00000509611 723 ntBASIC19.47■□□□□ 0.71
VPS29Q9UBQ0 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
VPS29Q9UBQ0 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
VPS29Q9UBQ0 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
VPS29Q9UBQ0 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
VPS29Q9UBQ0 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
VPS29Q9UBQ0 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
VPS29Q9UBQ0 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
VPS29Q9UBQ0 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC19.47■□□□□ 0.71
VPS29Q9UBQ0 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
VPS29Q9UBQ0 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
VPS29Q9UBQ0 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC19.46■□□□□ 0.71
VPS29Q9UBQ0 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
VPS29Q9UBQ0 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
VPS29Q9UBQ0 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
VPS29Q9UBQ0 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
VPS29Q9UBQ0 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
VPS29Q9UBQ0 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
VPS29Q9UBQ0 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
VPS29Q9UBQ0 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
VPS29Q9UBQ0 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
VPS29Q9UBQ0 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC19.46■□□□□ 0.71
VPS29Q9UBQ0 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC19.46■□□□□ 0.71
VPS29Q9UBQ0 AC016769.1-201ENST00000409132 1010 ntBASIC19.46■□□□□ 0.71
VPS29Q9UBQ0 PGM5P4-201ENST00000421970 445 ntBASIC19.46■□□□□ 0.71
VPS29Q9UBQ0 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC19.46■□□□□ 0.71
VPS29Q9UBQ0 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
VPS29Q9UBQ0 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
VPS29Q9UBQ0 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
VPS29Q9UBQ0 WWOX-218ENST00000627394 894 ntTSL 5 BASIC19.46■□□□□ 0.71
VPS29Q9UBQ0 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
VPS29Q9UBQ0 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
VPS29Q9UBQ0 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
VPS29Q9UBQ0 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC19.46■□□□□ 0.71
VPS29Q9UBQ0 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
VPS29Q9UBQ0 ADM-207ENST00000530439 1839 ntTSL 2 BASIC19.46■□□□□ 0.71
VPS29Q9UBQ0 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
VPS29Q9UBQ0 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
VPS29Q9UBQ0 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
VPS29Q9UBQ0 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC19.45■□□□□ 0.7
VPS29Q9UBQ0 PCDHAC2-203ENST00000615316 3011 ntBASIC19.45■□□□□ 0.7
VPS29Q9UBQ0 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
VPS29Q9UBQ0 SMG8-203ENST00000578922 2178 ntBASIC19.45■□□□□ 0.7
VPS29Q9UBQ0 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
VPS29Q9UBQ0 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC19.45■□□□□ 0.7
VPS29Q9UBQ0 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC19.45■□□□□ 0.7
VPS29Q9UBQ0 PBX1-209ENST00000485769 834 ntTSL 2 BASIC19.45■□□□□ 0.7
VPS29Q9UBQ0 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC19.45■□□□□ 0.7
VPS29Q9UBQ0 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
VPS29Q9UBQ0 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
VPS29Q9UBQ0 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC19.45■□□□□ 0.7
VPS29Q9UBQ0 AC112907.3-201ENST00000577781 2400 ntBASIC19.45■□□□□ 0.7
VPS29Q9UBQ0 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
VPS29Q9UBQ0 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
VPS29Q9UBQ0 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC19.45■□□□□ 0.7
VPS29Q9UBQ0 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
VPS29Q9UBQ0 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
VPS29Q9UBQ0 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
VPS29Q9UBQ0 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
VPS29Q9UBQ0 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
VPS29Q9UBQ0 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
VPS29Q9UBQ0 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
VPS29Q9UBQ0 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
VPS29Q9UBQ0 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC19.44■□□□□ 0.7
VPS29Q9UBQ0 MFSD11-216ENST00000590393 1141 ntBASIC19.44■□□□□ 0.7
VPS29Q9UBQ0 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
VPS29Q9UBQ0 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
VPS29Q9UBQ0 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC19.44■□□□□ 0.7
VPS29Q9UBQ0 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
VPS29Q9UBQ0 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
VPS29Q9UBQ0 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC19.43■□□□□ 0.7
VPS29Q9UBQ0 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
VPS29Q9UBQ0 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
VPS29Q9UBQ0 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC19.43■□□□□ 0.7
VPS29Q9UBQ0 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC19.43■□□□□ 0.7
VPS29Q9UBQ0 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC19.43■□□□□ 0.7
VPS29Q9UBQ0 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC19.43■□□□□ 0.7
VPS29Q9UBQ0 ME2-218ENST00000640965 2476 ntTSL 5 BASIC19.43■□□□□ 0.7
VPS29Q9UBQ0 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC19.43■□□□□ 0.7
VPS29Q9UBQ0 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
VPS29Q9UBQ0 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC19.43■□□□□ 0.7
VPS29Q9UBQ0 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
VPS29Q9UBQ0 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
VPS29Q9UBQ0 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 37.2 ms