Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
COL28A1Q2UY09 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC19.52■□□□□ 0.72
COL28A1Q2UY09 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC19.52■□□□□ 0.72
COL28A1Q2UY09 AC243732.1-201ENST00000612648 864 ntBASIC19.52■□□□□ 0.72
COL28A1Q2UY09 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC19.52■□□□□ 0.72
COL28A1Q2UY09 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
COL28A1Q2UY09 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
COL28A1Q2UY09 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
COL28A1Q2UY09 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
COL28A1Q2UY09 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
COL28A1Q2UY09 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC19.52■□□□□ 0.71
COL28A1Q2UY09 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
COL28A1Q2UY09 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC19.51■□□□□ 0.71
COL28A1Q2UY09 AP006587.3-201ENST00000525742 1516 ntBASIC19.51■□□□□ 0.71
COL28A1Q2UY09 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
COL28A1Q2UY09 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC19.51■□□□□ 0.71
COL28A1Q2UY09 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
COL28A1Q2UY09 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
COL28A1Q2UY09 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
COL28A1Q2UY09 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
COL28A1Q2UY09 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
COL28A1Q2UY09 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
COL28A1Q2UY09 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
COL28A1Q2UY09 CRAT-202ENST00000393384 973 ntTSL 2 BASIC19.51■□□□□ 0.71
COL28A1Q2UY09 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
COL28A1Q2UY09 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
COL28A1Q2UY09 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC19.51■□□□□ 0.71
COL28A1Q2UY09 LY6E-205ENST00000519611 635 ntTSL 3 BASIC19.51■□□□□ 0.71
COL28A1Q2UY09 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC19.51■□□□□ 0.71
COL28A1Q2UY09 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC19.51■□□□□ 0.71
COL28A1Q2UY09 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC19.51■□□□□ 0.71
COL28A1Q2UY09 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC19.51■□□□□ 0.71
COL28A1Q2UY09 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC19.51■□□□□ 0.71
COL28A1Q2UY09 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
COL28A1Q2UY09 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
COL28A1Q2UY09 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
COL28A1Q2UY09 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
COL28A1Q2UY09 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
COL28A1Q2UY09 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
COL28A1Q2UY09 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC19.51■□□□□ 0.71
COL28A1Q2UY09 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
COL28A1Q2UY09 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC19.51■□□□□ 0.71
COL28A1Q2UY09 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
COL28A1Q2UY09 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
COL28A1Q2UY09 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
COL28A1Q2UY09 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC19.5■□□□□ 0.71
COL28A1Q2UY09 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC19.5■□□□□ 0.71
COL28A1Q2UY09 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
COL28A1Q2UY09 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
COL28A1Q2UY09 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
COL28A1Q2UY09 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
COL28A1Q2UY09 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
COL28A1Q2UY09 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
COL28A1Q2UY09 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC19.5■□□□□ 0.71
COL28A1Q2UY09 PENK-204ENST00000518770 863 ntTSL 2 BASIC19.5■□□□□ 0.71
COL28A1Q2UY09 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC19.5■□□□□ 0.71
COL28A1Q2UY09 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC19.5■□□□□ 0.71
COL28A1Q2UY09 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC19.5■□□□□ 0.71
COL28A1Q2UY09 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
COL28A1Q2UY09 AC124016.1-201ENST00000609552 612 ntBASIC19.5■□□□□ 0.71
COL28A1Q2UY09 AL589743.5-201ENST00000616611 1050 ntBASIC19.5■□□□□ 0.71
COL28A1Q2UY09 AL023875.1-201ENST00000640777 796 ntBASIC19.5■□□□□ 0.71
COL28A1Q2UY09 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
COL28A1Q2UY09 AC026471.6-201ENST00000622954 1905 ntBASIC19.5■□□□□ 0.71
COL28A1Q2UY09 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC19.5■□□□□ 0.71
COL28A1Q2UY09 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
COL28A1Q2UY09 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC19.5■□□□□ 0.71
COL28A1Q2UY09 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
COL28A1Q2UY09 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
COL28A1Q2UY09 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
COL28A1Q2UY09 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
COL28A1Q2UY09 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
COL28A1Q2UY09 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
COL28A1Q2UY09 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
COL28A1Q2UY09 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
COL28A1Q2UY09 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
COL28A1Q2UY09 NME3-204ENST00000563498 920 ntTSL 2 BASIC19.49■□□□□ 0.71
COL28A1Q2UY09 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
COL28A1Q2UY09 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
COL28A1Q2UY09 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC19.49■□□□□ 0.71
COL28A1Q2UY09 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
COL28A1Q2UY09 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC19.49■□□□□ 0.71
COL28A1Q2UY09 KRT16P2-201ENST00000414673 1423 ntBASIC19.49■□□□□ 0.71
COL28A1Q2UY09 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
COL28A1Q2UY09 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC19.49■□□□□ 0.71
COL28A1Q2UY09 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
COL28A1Q2UY09 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
COL28A1Q2UY09 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
COL28A1Q2UY09 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
COL28A1Q2UY09 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC19.48■□□□□ 0.71
COL28A1Q2UY09 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
COL28A1Q2UY09 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
COL28A1Q2UY09 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
COL28A1Q2UY09 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC19.48■□□□□ 0.71
COL28A1Q2UY09 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC19.48■□□□□ 0.71
COL28A1Q2UY09 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC19.48■□□□□ 0.71
COL28A1Q2UY09 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC19.48■□□□□ 0.71
COL28A1Q2UY09 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
COL28A1Q2UY09 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC19.48■□□□□ 0.71
COL28A1Q2UY09 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 19.6 ms