Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
RNF4P78317 STK25-205ENST00000405883 1904 ntTSL 2 BASIC18.82■□□□□ 0.6
RNF4P78317 AL121603.2-201ENST00000557373 2117 ntBASIC18.82■□□□□ 0.6
RNF4P78317 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
RNF4P78317 AC007225.1-201ENST00000566331 1836 ntBASIC18.81■□□□□ 0.6
RNF4P78317 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
RNF4P78317 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
RNF4P78317 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC18.81■□□□□ 0.6
RNF4P78317 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC18.81■□□□□ 0.6
RNF4P78317 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC18.81■□□□□ 0.6
RNF4P78317 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC18.81■□□□□ 0.6
RNF4P78317 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
RNF4P78317 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
RNF4P78317 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC18.81■□□□□ 0.6
RNF4P78317 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
RNF4P78317 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC18.81■□□□□ 0.6
RNF4P78317 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC18.81■□□□□ 0.6
RNF4P78317 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
RNF4P78317 BRWD1-AS2-201ENST00000603064 1028 ntBASIC18.81■□□□□ 0.6
RNF4P78317 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC18.81■□□□□ 0.6
RNF4P78317 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC18.81■□□□□ 0.6
RNF4P78317 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
RNF4P78317 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC18.81■□□□□ 0.6
RNF4P78317 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC18.81■□□□□ 0.6
RNF4P78317 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
RNF4P78317 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC18.8■□□□□ 0.6
RNF4P78317 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
RNF4P78317 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC18.8■□□□□ 0.6
RNF4P78317 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
RNF4P78317 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
RNF4P78317 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
RNF4P78317 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
RNF4P78317 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
RNF4P78317 MFF-205ENST00000354503 1085 ntTSL 2 BASIC18.8■□□□□ 0.6
RNF4P78317 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC18.8■□□□□ 0.6
RNF4P78317 RNA5SP413-201ENST00000516373 109 ntBASIC18.8■□□□□ 0.6
RNF4P78317 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC18.8■□□□□ 0.6
RNF4P78317 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC18.8■□□□□ 0.6
RNF4P78317 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC18.8■□□□□ 0.6
RNF4P78317 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC18.8■□□□□ 0.6
RNF4P78317 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
RNF4P78317 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
RNF4P78317 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
RNF4P78317 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
RNF4P78317 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
RNF4P78317 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
RNF4P78317 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
RNF4P78317 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
RNF4P78317 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC18.79■□□□□ 0.6
RNF4P78317 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
RNF4P78317 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
RNF4P78317 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
RNF4P78317 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC18.79■□□□□ 0.6
RNF4P78317 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
RNF4P78317 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
RNF4P78317 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
RNF4P78317 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC18.79■□□□□ 0.6
RNF4P78317 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC18.79■□□□□ 0.6
RNF4P78317 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC18.79■□□□□ 0.6
RNF4P78317 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
RNF4P78317 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
RNF4P78317 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
RNF4P78317 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC18.79■□□□□ 0.6
RNF4P78317 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
RNF4P78317 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC18.79■□□□□ 0.6
RNF4P78317 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC18.79■□□□□ 0.6
RNF4P78317 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
RNF4P78317 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC18.79■□□□□ 0.6
RNF4P78317 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC18.78■□□□□ 0.6
RNF4P78317 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC18.78■□□□□ 0.6
RNF4P78317 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC18.78■□□□□ 0.6
RNF4P78317 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
RNF4P78317 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
RNF4P78317 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
RNF4P78317 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
RNF4P78317 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC18.78■□□□□ 0.6
RNF4P78317 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC18.78■□□□□ 0.6
RNF4P78317 INO80E-214ENST00000620599 515 ntTSL 2 BASIC18.78■□□□□ 0.6
RNF4P78317 TBCB-214ENST00000629269 413 ntTSL 5 BASIC18.78■□□□□ 0.6
RNF4P78317 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
RNF4P78317 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
RNF4P78317 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
RNF4P78317 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
RNF4P78317 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
RNF4P78317 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC18.78■□□□□ 0.6
RNF4P78317 CRK-204ENST00000574295 1391 ntTSL 5 BASIC18.78■□□□□ 0.6
RNF4P78317 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
RNF4P78317 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC18.77■□□□□ 0.6
RNF4P78317 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
RNF4P78317 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
RNF4P78317 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC18.77■□□□□ 0.6
RNF4P78317 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC18.77■□□□□ 0.6
RNF4P78317 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
RNF4P78317 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC18.77■□□□□ 0.6
RNF4P78317 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC18.77■□□□□ 0.6
RNF4P78317 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
RNF4P78317 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
RNF4P78317 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
RNF4P78317 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
RNF4P78317 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 45.9 ms