Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
CLRN1P58418 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
CLRN1P58418 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC18.14■□□□□ 0.49
CLRN1P58418 GAS2L1P2-201ENST00000436355 1356 ntBASIC18.14■□□□□ 0.49
CLRN1P58418 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC18.14■□□□□ 0.49
CLRN1P58418 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC18.14■□□□□ 0.49
CLRN1P58418 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC18.14■□□□□ 0.49
CLRN1P58418 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CLRN1P58418 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CLRN1P58418 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CLRN1P58418 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CLRN1P58418 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
CLRN1P58418 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC18.13■□□□□ 0.49
CLRN1P58418 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CLRN1P58418 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CLRN1P58418 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CLRN1P58418 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
CLRN1P58418 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
CLRN1P58418 PGM5P4-201ENST00000421970 445 ntBASIC18.13■□□□□ 0.49
CLRN1P58418 AL162412.1-201ENST00000567129 965 ntBASIC18.13■□□□□ 0.49
CLRN1P58418 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC18.13■□□□□ 0.49
CLRN1P58418 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC18.13■□□□□ 0.49
CLRN1P58418 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC18.13■□□□□ 0.49
CLRN1P58418 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC18.13■□□□□ 0.49
CLRN1P58418 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC18.13■□□□□ 0.49
CLRN1P58418 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
CLRN1P58418 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CLRN1P58418 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC18.13■□□□□ 0.49
CLRN1P58418 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC18.13■□□□□ 0.49
CLRN1P58418 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
CLRN1P58418 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
CLRN1P58418 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.49
CLRN1P58418 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC18.13■□□□□ 0.49
CLRN1P58418 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC18.13■□□□□ 0.49
CLRN1P58418 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
CLRN1P58418 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
CLRN1P58418 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC18.13■□□□□ 0.49
CLRN1P58418 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CLRN1P58418 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC18.12■□□□□ 0.49
CLRN1P58418 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CLRN1P58418 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CLRN1P58418 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CLRN1P58418 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC18.12■□□□□ 0.49
CLRN1P58418 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CLRN1P58418 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CLRN1P58418 VMO1-204ENST00000441199 741 ntTSL 2 BASIC18.12■□□□□ 0.49
CLRN1P58418 DUX4L16-201ENST00000555130 1264 ntBASIC18.12■□□□□ 0.49
CLRN1P58418 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC18.12■□□□□ 0.49
CLRN1P58418 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC18.12■□□□□ 0.49
CLRN1P58418 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CLRN1P58418 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC18.12■□□□□ 0.49
CLRN1P58418 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC18.12■□□□□ 0.49
CLRN1P58418 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC18.12■□□□□ 0.49
CLRN1P58418 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CLRN1P58418 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
CLRN1P58418 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC18.12■□□□□ 0.49
CLRN1P58418 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC18.11■□□□□ 0.49
CLRN1P58418 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
CLRN1P58418 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CLRN1P58418 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC18.11■□□□□ 0.49
CLRN1P58418 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC18.11■□□□□ 0.49
CLRN1P58418 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
CLRN1P58418 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC18.11■□□□□ 0.49
CLRN1P58418 AC138932.1-201ENST00000534164 6830 ntBASIC18.11■□□□□ 0.49
CLRN1P58418 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
CLRN1P58418 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC18.11■□□□□ 0.49
CLRN1P58418 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CLRN1P58418 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC18.11■□□□□ 0.49
CLRN1P58418 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
CLRN1P58418 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CLRN1P58418 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC18.11■□□□□ 0.49
CLRN1P58418 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CLRN1P58418 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC18.11■□□□□ 0.49
CLRN1P58418 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CLRN1P58418 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC18.11■□□□□ 0.49
CLRN1P58418 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC18.11■□□□□ 0.49
CLRN1P58418 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC18.11■□□□□ 0.49
CLRN1P58418 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
CLRN1P58418 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC18.11■□□□□ 0.49
CLRN1P58418 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CLRN1P58418 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CLRN1P58418 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC18.11■□□□□ 0.49
CLRN1P58418 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CLRN1P58418 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
CLRN1P58418 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CLRN1P58418 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC18.1■□□□□ 0.49
CLRN1P58418 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CLRN1P58418 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
CLRN1P58418 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CLRN1P58418 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CLRN1P58418 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CLRN1P58418 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CLRN1P58418 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CLRN1P58418 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
CLRN1P58418 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CLRN1P58418 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CLRN1P58418 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
CLRN1P58418 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
CLRN1P58418 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CLRN1P58418 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC18.1■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 18.2 ms