Protein–RNA interactions for Protein: P42858

HTT, Huntingtin, humanhuman

Predictions only

Length 3,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HTTP42858 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
HTTP42858 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
HTTP42858 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
HTTP42858 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC23.08■■□□□ 1.29
HTTP42858 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC23.08■■□□□ 1.29
HTTP42858 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC23.08■■□□□ 1.28
HTTP42858 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.28
HTTP42858 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.28
HTTP42858 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC23.08■■□□□ 1.28
HTTP42858 TREX2-204ENST00000370212 861 ntTSL 5 BASIC23.08■■□□□ 1.28
HTTP42858 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC23.08■■□□□ 1.28
HTTP42858 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC23.08■■□□□ 1.28
HTTP42858 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC23.08■■□□□ 1.28
HTTP42858 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC23.08■■□□□ 1.28
HTTP42858 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC23.08■■□□□ 1.28
HTTP42858 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.28
HTTP42858 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC23.07■■□□□ 1.28
HTTP42858 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
HTTP42858 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC23.07■■□□□ 1.28
HTTP42858 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC23.07■■□□□ 1.28
HTTP42858 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC23.07■■□□□ 1.28
HTTP42858 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC23.07■■□□□ 1.28
HTTP42858 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC23.07■■□□□ 1.28
HTTP42858 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC23.07■■□□□ 1.28
HTTP42858 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
HTTP42858 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
HTTP42858 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC23.07■■□□□ 1.28
HTTP42858 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC23.07■■□□□ 1.28
HTTP42858 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC23.07■■□□□ 1.28
HTTP42858 AC010203.1-204ENST00000548782 407 ntBASIC23.06■■□□□ 1.28
HTTP42858 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC23.06■■□□□ 1.28
HTTP42858 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
HTTP42858 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC23.06■■□□□ 1.28
HTTP42858 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
HTTP42858 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
HTTP42858 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
HTTP42858 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC23.06■■□□□ 1.28
HTTP42858 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC23.06■■□□□ 1.28
HTTP42858 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC23.06■■□□□ 1.28
HTTP42858 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC23.06■■□□□ 1.28
HTTP42858 ME2-206ENST00000638410 2289 ntTSL 5 BASIC23.06■■□□□ 1.28
HTTP42858 ME2-210ENST00000639255 2262 ntTSL 5 BASIC23.06■■□□□ 1.28
HTTP42858 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC23.06■■□□□ 1.28
HTTP42858 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
HTTP42858 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC23.06■■□□□ 1.28
HTTP42858 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC23.05■■□□□ 1.28
HTTP42858 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
HTTP42858 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
HTTP42858 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
HTTP42858 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
HTTP42858 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC23.05■■□□□ 1.28
HTTP42858 ECEL1P2-202ENST00000465689 757 ntBASIC23.05■■□□□ 1.28
HTTP42858 AC116562.2-201ENST00000507042 360 ntBASIC23.05■■□□□ 1.28
HTTP42858 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC23.05■■□□□ 1.28
HTTP42858 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC23.05■■□□□ 1.28
HTTP42858 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
HTTP42858 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC23.05■■□□□ 1.28
HTTP42858 TERT-206ENST00000508104 2486 ntTSL 5 BASIC23.05■■□□□ 1.28
HTTP42858 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
HTTP42858 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC23.05■■□□□ 1.28
HTTP42858 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC23.05■■□□□ 1.28
HTTP42858 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
HTTP42858 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
HTTP42858 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC23.05■■□□□ 1.28
HTTP42858 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC23.05■■□□□ 1.28
HTTP42858 LGALS8-AS1-201ENST00000487567 1457 ntBASIC23.04■■□□□ 1.28
HTTP42858 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
HTTP42858 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC23.04■■□□□ 1.28
HTTP42858 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC23.04■■□□□ 1.28
HTTP42858 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC23.04■■□□□ 1.28
HTTP42858 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC23.04■■□□□ 1.28
HTTP42858 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
HTTP42858 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC23.04■■□□□ 1.28
HTTP42858 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC23.04■■□□□ 1.28
HTTP42858 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC23.04■■□□□ 1.28
HTTP42858 AC080038.3-201ENST00000623346 1952 ntBASIC23.04■■□□□ 1.28
HTTP42858 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC23.04■■□□□ 1.28
HTTP42858 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
HTTP42858 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
HTTP42858 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC23.04■■□□□ 1.28
HTTP42858 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
HTTP42858 NBPF21P-201ENST00000425093 1451 ntBASIC23.03■■□□□ 1.28
HTTP42858 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC23.03■■□□□ 1.28
HTTP42858 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC23.03■■□□□ 1.28
HTTP42858 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
HTTP42858 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
HTTP42858 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
HTTP42858 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
HTTP42858 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC23.03■■□□□ 1.28
HTTP42858 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC23.03■■□□□ 1.28
HTTP42858 ST20-MTHFS-203ENST00000615374 679 ntAPPRIS P1 TSL 3 BASIC23.03■■□□□ 1.28
HTTP42858 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC23.03■■□□□ 1.28
HTTP42858 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
HTTP42858 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC23.03■■□□□ 1.28
HTTP42858 STK25-205ENST00000405883 1904 ntTSL 2 BASIC23.03■■□□□ 1.28
HTTP42858 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC23.03■■□□□ 1.28
HTTP42858 STX5-203ENST00000394690 1568 ntTSL 5 BASIC23.03■■□□□ 1.28
HTTP42858 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
HTTP42858 KRT18P48-201ENST00000434763 852 ntBASIC23.03■■□□□ 1.28
HTTP42858 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
Retrieved 100 of 98,524 protein–RNA pairs in 36 ms