Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC20.32■□□□□ 0.84
PTPN4P29074 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
PTPN4P29074 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC20.32■□□□□ 0.84
PTPN4P29074 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
PTPN4P29074 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC20.32■□□□□ 0.84
PTPN4P29074 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
PTPN4P29074 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC20.32■□□□□ 0.84
PTPN4P29074 METTL26-203ENST00000397664 604 ntTSL 2 BASIC20.32■□□□□ 0.84
PTPN4P29074 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
PTPN4P29074 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC20.32■□□□□ 0.84
PTPN4P29074 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC20.32■□□□□ 0.84
PTPN4P29074 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC20.32■□□□□ 0.84
PTPN4P29074 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
PTPN4P29074 GXYLT1P5-201ENST00000614548 1189 ntBASIC20.32■□□□□ 0.84
PTPN4P29074 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
PTPN4P29074 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC20.32■□□□□ 0.84
PTPN4P29074 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
PTPN4P29074 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
PTPN4P29074 DET1-207ENST00000564406 2315 ntTSL 2 BASIC20.32■□□□□ 0.84
PTPN4P29074 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
PTPN4P29074 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
PTPN4P29074 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
PTPN4P29074 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC20.32■□□□□ 0.84
PTPN4P29074 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
PTPN4P29074 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC20.32■□□□□ 0.84
PTPN4P29074 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
PTPN4P29074 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
PTPN4P29074 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
PTPN4P29074 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
PTPN4P29074 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
PTPN4P29074 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
PTPN4P29074 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
PTPN4P29074 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
PTPN4P29074 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC20.31■□□□□ 0.84
PTPN4P29074 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC20.31■□□□□ 0.84
PTPN4P29074 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC20.31■□□□□ 0.84
PTPN4P29074 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
PTPN4P29074 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
PTPN4P29074 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
PTPN4P29074 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC20.31■□□□□ 0.84
PTPN4P29074 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
PTPN4P29074 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
PTPN4P29074 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
PTPN4P29074 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC20.3■□□□□ 0.84
PTPN4P29074 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC20.3■□□□□ 0.84
PTPN4P29074 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC20.3■□□□□ 0.84
PTPN4P29074 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
PTPN4P29074 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
PTPN4P29074 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
PTPN4P29074 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
PTPN4P29074 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
PTPN4P29074 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
PTPN4P29074 AC098818.2-201ENST00000564925 2320 ntBASIC20.3■□□□□ 0.84
PTPN4P29074 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
PTPN4P29074 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
PTPN4P29074 SPI1-203ENST00000533030 661 ntTSL 2 BASIC20.3■□□□□ 0.84
PTPN4P29074 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC20.3■□□□□ 0.84
PTPN4P29074 AC011767.1-201ENST00000617410 1153 ntBASIC20.3■□□□□ 0.84
PTPN4P29074 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
PTPN4P29074 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
PTPN4P29074 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC20.3■□□□□ 0.84
PTPN4P29074 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
PTPN4P29074 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
PTPN4P29074 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
PTPN4P29074 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC20.3■□□□□ 0.84
PTPN4P29074 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC20.3■□□□□ 0.84
PTPN4P29074 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
PTPN4P29074 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC20.3■□□□□ 0.84
PTPN4P29074 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
PTPN4P29074 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
PTPN4P29074 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
PTPN4P29074 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
PTPN4P29074 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC20.29■□□□□ 0.84
PTPN4P29074 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC20.29■□□□□ 0.84
PTPN4P29074 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
PTPN4P29074 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
PTPN4P29074 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
PTPN4P29074 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
PTPN4P29074 DENND3-207ENST00000518347 850 ntTSL 2 BASIC20.29■□□□□ 0.84
PTPN4P29074 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC20.29■□□□□ 0.84
PTPN4P29074 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
PTPN4P29074 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
PTPN4P29074 AC007225.1-201ENST00000566331 1836 ntBASIC20.29■□□□□ 0.84
PTPN4P29074 KRT87P-202ENST00000534226 1464 ntBASIC20.29■□□□□ 0.84
PTPN4P29074 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
PTPN4P29074 AL512408.1-201ENST00000569378 2000 ntBASIC20.29■□□□□ 0.84
PTPN4P29074 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
PTPN4P29074 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
PTPN4P29074 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
PTPN4P29074 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC20.28■□□□□ 0.84
PTPN4P29074 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
PTPN4P29074 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC20.28■□□□□ 0.84
PTPN4P29074 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC20.28■□□□□ 0.84
PTPN4P29074 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
PTPN4P29074 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
PTPN4P29074 AC006970.2-201ENST00000450065 779 ntBASIC20.28■□□□□ 0.84
PTPN4P29074 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC20.28■□□□□ 0.84
PTPN4P29074 PPP1R14BP3-201ENST00000509033 445 ntBASIC20.28■□□□□ 0.84
PTPN4P29074 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC20.28■□□□□ 0.84
PTPN4P29074 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 21.1 ms