Protein–RNA interactions for Protein: P25336

MSH3, DNA mismatch repair protein MSH3, yeastyeast

Predictions only

Length 1,018 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
MSH3P25336 RPL25YOL127W 429 nt3.29□□□□□ -1.88
MSH3P25336 RIX1YHR197W 2292 nt3.29□□□□□ -1.88
MSH3P25336 DUF1YOL087C 3351 nt3.29□□□□□ -1.88
MSH3P25336 RPA190YOR341W 4995 nt3.28□□□□□ -1.88
MSH3P25336 ITC1YGL133W 3795 nt3.28□□□□□ -1.88
MSH3P25336 YHR086W-AYHR086W-A 162 nt3.28□□□□□ -1.88
MSH3P25336 HHT1YBR010W 411 nt3.28□□□□□ -1.88
MSH3P25336 DRS2YAL026C 4068 nt3.28□□□□□ -1.88
MSH3P25336 RAX2YLR084C 3663 nt3.28□□□□□ -1.89
MSH3P25336 PUF4YGL014W 2667 nt3.27□□□□□ -1.89
MSH3P25336 PMR1YGL167C 2853 nt3.27□□□□□ -1.89
MSH3P25336 VAS1YGR094W 3315 nt3.27□□□□□ -1.89
MSH3P25336 POL3YDL102W 3294 nt3.27□□□□□ -1.89
MSH3P25336 MRPL33YMR286W 261 nt3.27□□□□□ -1.89
MSH3P25336 TFC4YGR047C 3078 nt3.26□□□□□ -1.89
MSH3P25336 NPR2YEL062W 1848 nt3.26□□□□□ -1.89
MSH3P25336 SAP1YER047C 2694 nt3.26□□□□□ -1.89
MSH3P25336 YDL185C-AYDL185C-A 228 nt3.26□□□□□ -1.89
MSH3P25336 PNC1YGL037C 651 nt3.26□□□□□ -1.89
MSH3P25336 YHL041WYHL041W 450 nt3.26□□□□□ -1.89
MSH3P25336 YMR172C-AYMR172C-A 384 nt3.26□□□□□ -1.89
MSH3P25336 YPR063CYPR063C 423 nt3.26□□□□□ -1.89
MSH3P25336 MVP1YMR004W 1536 nt3.25□□□□□ -1.89
MSH3P25336 GPG1YGL121C 381 nt3.25□□□□□ -1.89
MSH3P25336 PHS1YJL097W 654 nt3.25□□□□□ -1.89
MSH3P25336 RPL38YLR325C 237 nt3.25□□□□□ -1.89
MSH3P25336 YBR197CYBR197C 654 nt3.25□□□□□ -1.89
MSH3P25336 NUP120YKL057C 3114 nt3.25□□□□□ -1.89
MSH3P25336 RGC1YPR115W 3252 nt3.25□□□□□ -1.89
MSH3P25336 AI2Q0055 2565 nt3.24□□□□□ -1.89
MSH3P25336 NPC2YDL046W 522 nt3.24□□□□□ -1.89
MSH3P25336 YLR154W-EYLR154W-E 204 nt3.24□□□□□ -1.89
MSH3P25336 CYB5YNL111C 363 nt3.24□□□□□ -1.89
MSH3P25336 YNL338WYNL338W 159 nt3.24□□□□□ -1.89
MSH3P25336 BUD4YJR092W 4344 nt3.24□□□□□ -1.89
MSH3P25336 TAF2YCR042C 4224 nt3.24□□□□□ -1.89
MSH3P25336 RLI1YDR091C 1827 nt3.23□□□□□ -1.89
MSH3P25336 SOK2YMR016C 2358 nt3.23□□□□□ -1.89
MSH3P25336 IPT1YDR072C 1584 nt3.23□□□□□ -1.89
MSH3P25336 DOT6YER088C 2013 nt3.23□□□□□ -1.89
MSH3P25336 DFG16YOR030W 1860 nt3.23□□□□□ -1.89
MSH3P25336 JSN1YJR091C 3276 nt3.23□□□□□ -1.89
MSH3P25336 SEC7YDR170C 6030 nt3.23□□□□□ -1.89
MSH3P25336 DYN1YKR054C 12279 nt3.22□□□□□ -1.89
MSH3P25336 SRB8YCR081W 4284 nt3.22□□□□□ -1.89
MSH3P25336 YJL070CYJL070C 2667 nt3.22□□□□□ -1.89
MSH3P25336 YDL007C-AYDL007C-A 258 nt3.22□□□□□ -1.89
MSH3P25336 YRB1YDR002W 606 nt3.22□□□□□ -1.89
MSH3P25336 YGL014C-AYGL014C-A 162 nt3.22□□□□□ -1.89
MSH3P25336 YGL052WYGL052W 306 nt3.22□□□□□ -1.89
MSH3P25336 YHL005CYHL005C 393 nt3.22□□□□□ -1.89
MSH3P25336 RPL6AYML073C 531 nt3.22□□□□□ -1.89
MSH3P25336 YOR170WYOR170W 306 nt3.22□□□□□ -1.89
MSH3P25336 IKI3YLR384C 4050 nt3.22□□□□□ -1.89
MSH3P25336 BFA1YJR053W 1725 nt3.22□□□□□ -1.89
MSH3P25336 SAK1YER129W 3429 nt3.21□□□□□ -1.9
MSH3P25336 snR60snR60 104 nt3.21□□□□□ -1.9
MSH3P25336 YOR302WYOR302W 78 nt3.21□□□□□ -1.9
MSH3P25336 RTC6YPL183W-A 282 nt3.21□□□□□ -1.9
MSH3P25336 ORC1YML065W 2745 nt3.21□□□□□ -1.9
MSH3P25336 SCW11YGL028C 1629 nt3.21□□□□□ -1.9
MSH3P25336 MOT1YPL082C 5604 nt3.21□□□□□ -1.9
MSH3P25336 YLR278CYLR278C 4026 nt3.2□□□□□ -1.9
MSH3P25336 ROG1YGL144C 2058 nt3.2□□□□□ -1.9
MSH3P25336 NCL1YBL024W 2055 nt3.2□□□□□ -1.9
MSH3P25336 SGD1YLR336C 2700 nt3.2□□□□□ -1.9
MSH3P25336 YGL069CYGL069C 465 nt3.2□□□□□ -1.9
MSH3P25336 PCC1YKR095W-A 267 nt3.2□□□□□ -1.9
MSH3P25336 MDM1YML104C 3384 nt3.2□□□□□ -1.9
MSH3P25336 PSY2YNL201C 2577 nt3.2□□□□□ -1.9
MSH3P25336 MPH1YIR002C 2982 nt3.2□□□□□ -1.9
MSH3P25336 YGR250CYGR250C 2346 nt3.2□□□□□ -1.9
MSH3P25336 MET5YJR137C 4329 nt3.19□□□□□ -1.9
MSH3P25336 NFT1YKR103W 3657 nt3.19□□□□□ -1.9
MSH3P25336 snR76snR76 109 nt3.19□□□□□ -1.9
MSH3P25336 tC(GCA)BtC(GCA)B 72 nt3.19□□□□□ -1.9
MSH3P25336 tC(GCA)GtC(GCA)G 72 nt3.19□□□□□ -1.9
MSH3P25336 tC(GCA)P1tC(GCA)P1 72 nt3.19□□□□□ -1.9
MSH3P25336 tC(GCA)P2tC(GCA)P2 72 nt3.19□□□□□ -1.9
MSH3P25336 PAU2YEL049W 363 nt3.19□□□□□ -1.9
MSH3P25336 YLR342W-AYLR342W-A 174 nt3.19□□□□□ -1.9
MSH3P25336 LCL1YPL056C 306 nt3.19□□□□□ -1.9
MSH3P25336 YPR203WYPR203W 309 nt3.19□□□□□ -1.9
MSH3P25336 YOR296WYOR296W 3870 nt3.19□□□□□ -1.9
MSH3P25336 SNU114YKL173W 3027 nt3.19□□□□□ -1.9
MSH3P25336 DBP10YDL031W 2988 nt3.18□□□□□ -1.9
MSH3P25336 YDL025W-AYDL025W-A 105 nt3.18□□□□□ -1.9
MSH3P25336 GRX8YLR364W 330 nt3.18□□□□□ -1.9
MSH3P25336 RGM1YMR182C 636 nt3.18□□□□□ -1.9
MSH3P25336 LSM7YNL147W 348 nt3.18□□□□□ -1.9
MSH3P25336 SNQ2YDR011W 4506 nt3.18□□□□□ -1.9
MSH3P25336 NAB3YPL190C 2409 nt3.18□□□□□ -1.9
MSH3P25336 ILS1YBL076C 3219 nt3.17□□□□□ -1.9
MSH3P25336 YDR209CYDR209C 414 nt3.17□□□□□ -1.9
MSH3P25336 tF(GAA)DtF(GAA)D 73 nt3.17□□□□□ -1.9
MSH3P25336 tF(GAA)NtF(GAA)N 73 nt3.17□□□□□ -1.9
MSH3P25336 YML007C-AYML007C-A 111 nt3.17□□□□□ -1.9
MSH3P25336 YMR141W-AYMR141W-A 225 nt3.17□□□□□ -1.9
MSH3P25336 HDA3YPR179C 1968 nt3.17□□□□□ -1.9
MSH3P25336 TOF2YKR010C 2316 nt3.17□□□□□ -1.9
Retrieved 100 of 7,029 protein–RNA pairs in 104.2 ms