Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
LDLRP01130 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
LDLRP01130 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
LDLRP01130 AC010141.3-201ENST00000456659 717 ntBASIC19.55■□□□□ 0.72
LDLRP01130 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC19.55■□□□□ 0.72
LDLRP01130 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC19.55■□□□□ 0.72
LDLRP01130 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC19.55■□□□□ 0.72
LDLRP01130 MIR4651-201ENST00000582622 73 ntBASIC19.55■□□□□ 0.72
LDLRP01130 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC19.55■□□□□ 0.72
LDLRP01130 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC19.55■□□□□ 0.72
LDLRP01130 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
LDLRP01130 AL050303.2-201ENST00000619798 666 ntBASIC19.55■□□□□ 0.72
LDLRP01130 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC19.55■□□□□ 0.72
LDLRP01130 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
LDLRP01130 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC19.55■□□□□ 0.72
LDLRP01130 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
LDLRP01130 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC19.54■□□□□ 0.72
LDLRP01130 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
LDLRP01130 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC19.54■□□□□ 0.72
LDLRP01130 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC19.54■□□□□ 0.72
LDLRP01130 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC19.54■□□□□ 0.72
LDLRP01130 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC19.54■□□□□ 0.72
LDLRP01130 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
LDLRP01130 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
LDLRP01130 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
LDLRP01130 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
LDLRP01130 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
LDLRP01130 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
LDLRP01130 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
LDLRP01130 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
LDLRP01130 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
LDLRP01130 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC19.54■□□□□ 0.72
LDLRP01130 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC19.54■□□□□ 0.72
LDLRP01130 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
LDLRP01130 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
LDLRP01130 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
LDLRP01130 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC19.54■□□□□ 0.72
LDLRP01130 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC19.54■□□□□ 0.72
LDLRP01130 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
LDLRP01130 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC19.54■□□□□ 0.72
LDLRP01130 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
LDLRP01130 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC19.53■□□□□ 0.72
LDLRP01130 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
LDLRP01130 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
LDLRP01130 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
LDLRP01130 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC19.53■□□□□ 0.72
LDLRP01130 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC19.53■□□□□ 0.72
LDLRP01130 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC19.53■□□□□ 0.72
LDLRP01130 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
LDLRP01130 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
LDLRP01130 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
LDLRP01130 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC19.53■□□□□ 0.72
LDLRP01130 FAM201B-201ENST00000458407 597 ntBASIC19.53■□□□□ 0.72
LDLRP01130 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC19.53■□□□□ 0.72
LDLRP01130 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC19.53■□□□□ 0.72
LDLRP01130 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC19.53■□□□□ 0.72
LDLRP01130 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC19.53■□□□□ 0.72
LDLRP01130 DET1-205ENST00000558413 583 ntTSL 4 BASIC19.53■□□□□ 0.72
LDLRP01130 MFSD11-216ENST00000590393 1141 ntBASIC19.53■□□□□ 0.72
LDLRP01130 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC19.53■□□□□ 0.72
LDLRP01130 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC19.53■□□□□ 0.72
LDLRP01130 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
LDLRP01130 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
LDLRP01130 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
LDLRP01130 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC19.52■□□□□ 0.72
LDLRP01130 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
LDLRP01130 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC19.52■□□□□ 0.72
LDLRP01130 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC19.52■□□□□ 0.72
LDLRP01130 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
LDLRP01130 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC19.52■□□□□ 0.72
LDLRP01130 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
LDLRP01130 AC121338.2-201ENST00000622535 1744 ntBASIC19.52■□□□□ 0.72
LDLRP01130 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
LDLRP01130 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
LDLRP01130 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
LDLRP01130 GUSBP6-202ENST00000438529 1198 ntBASIC19.52■□□□□ 0.72
LDLRP01130 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC19.52■□□□□ 0.72
LDLRP01130 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC19.52■□□□□ 0.72
LDLRP01130 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC19.52■□□□□ 0.72
LDLRP01130 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC19.52■□□□□ 0.72
LDLRP01130 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC19.52■□□□□ 0.72
LDLRP01130 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
LDLRP01130 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC19.52■□□□□ 0.72
LDLRP01130 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
LDLRP01130 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
LDLRP01130 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
LDLRP01130 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC19.52■□□□□ 0.72
LDLRP01130 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.71
LDLRP01130 AP004607.7-201ENST00000527152 1677 ntBASIC19.52■□□□□ 0.71
LDLRP01130 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
LDLRP01130 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
LDLRP01130 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
LDLRP01130 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
LDLRP01130 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC19.51■□□□□ 0.71
LDLRP01130 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC19.51■□□□□ 0.71
LDLRP01130 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
LDLRP01130 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
LDLRP01130 SLC7A5P2-201ENST00000553010 536 ntBASIC19.51■□□□□ 0.71
LDLRP01130 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC19.51■□□□□ 0.71
LDLRP01130 TFG-210ENST00000620299 1289 ntTSL 5 BASIC19.51■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms