Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SEMA3DO95025 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC19.44■□□□□ 0.7
SEMA3DO95025 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC19.44■□□□□ 0.7
SEMA3DO95025 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
SEMA3DO95025 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SEMA3DO95025 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
SEMA3DO95025 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC19.44■□□□□ 0.7
SEMA3DO95025 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC19.44■□□□□ 0.7
SEMA3DO95025 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC19.44■□□□□ 0.7
SEMA3DO95025 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
SEMA3DO95025 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
SEMA3DO95025 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC19.43■□□□□ 0.7
SEMA3DO95025 AC068338.2-201ENST00000563278 1430 ntBASIC19.43■□□□□ 0.7
SEMA3DO95025 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC19.43■□□□□ 0.7
SEMA3DO95025 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SEMA3DO95025 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
SEMA3DO95025 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC19.43■□□□□ 0.7
SEMA3DO95025 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC19.43■□□□□ 0.7
SEMA3DO95025 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC19.43■□□□□ 0.7
SEMA3DO95025 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
SEMA3DO95025 METTL26-203ENST00000397664 604 ntTSL 2 BASIC19.43■□□□□ 0.7
SEMA3DO95025 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC19.43■□□□□ 0.7
SEMA3DO95025 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC19.43■□□□□ 0.7
SEMA3DO95025 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC19.43■□□□□ 0.7
SEMA3DO95025 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SEMA3DO95025 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
SEMA3DO95025 AC100791.3-201ENST00000617619 330 ntBASIC19.43■□□□□ 0.7
SEMA3DO95025 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
SEMA3DO95025 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC19.43■□□□□ 0.7
SEMA3DO95025 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SEMA3DO95025 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SEMA3DO95025 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
SEMA3DO95025 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SEMA3DO95025 DET1-207ENST00000564406 2315 ntTSL 2 BASIC19.42■□□□□ 0.7
SEMA3DO95025 CYP21A1P-202ENST00000354927 1481 ntBASIC19.42■□□□□ 0.7
SEMA3DO95025 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC19.42■□□□□ 0.7
SEMA3DO95025 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
SEMA3DO95025 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SEMA3DO95025 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SEMA3DO95025 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SEMA3DO95025 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC19.42■□□□□ 0.7
SEMA3DO95025 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SEMA3DO95025 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
SEMA3DO95025 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
SEMA3DO95025 RARRES2P4-201ENST00000514074 484 ntBASIC19.42■□□□□ 0.7
SEMA3DO95025 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC19.42■□□□□ 0.7
SEMA3DO95025 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SEMA3DO95025 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SEMA3DO95025 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SEMA3DO95025 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
SEMA3DO95025 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC19.42■□□□□ 0.7
SEMA3DO95025 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC19.42■□□□□ 0.7
SEMA3DO95025 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
SEMA3DO95025 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SEMA3DO95025 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC19.41■□□□□ 0.7
SEMA3DO95025 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC19.41■□□□□ 0.7
SEMA3DO95025 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
SEMA3DO95025 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SEMA3DO95025 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
SEMA3DO95025 MIR935-201ENST00000401179 91 ntBASIC19.41■□□□□ 0.7
SEMA3DO95025 BET1L-204ENST00000410108 637 ntTSL 3 BASIC19.41■□□□□ 0.7
SEMA3DO95025 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC19.41■□□□□ 0.7
SEMA3DO95025 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC19.41■□□□□ 0.7
SEMA3DO95025 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC19.41■□□□□ 0.7
SEMA3DO95025 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC19.41■□□□□ 0.7
SEMA3DO95025 PARP1-210ENST00000629232 477 ntTSL 5 BASIC19.41■□□□□ 0.7
SEMA3DO95025 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
SEMA3DO95025 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SEMA3DO95025 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SEMA3DO95025 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC19.41■□□□□ 0.7
SEMA3DO95025 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SEMA3DO95025 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC19.41■□□□□ 0.7
SEMA3DO95025 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC19.41■□□□□ 0.7
SEMA3DO95025 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SEMA3DO95025 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SEMA3DO95025 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC19.41■□□□□ 0.7
SEMA3DO95025 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
SEMA3DO95025 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SEMA3DO95025 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
SEMA3DO95025 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SEMA3DO95025 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
SEMA3DO95025 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC19.4■□□□□ 0.7
SEMA3DO95025 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
SEMA3DO95025 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SEMA3DO95025 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC19.4■□□□□ 0.7
SEMA3DO95025 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SEMA3DO95025 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
SEMA3DO95025 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
SEMA3DO95025 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
SEMA3DO95025 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
SEMA3DO95025 PARL-206ENST00000435888 1098 ntTSL 5 BASIC19.4■□□□□ 0.7
SEMA3DO95025 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
SEMA3DO95025 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SEMA3DO95025 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC19.4■□□□□ 0.7
SEMA3DO95025 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
SEMA3DO95025 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
SEMA3DO95025 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SEMA3DO95025 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SEMA3DO95025 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SEMA3DO95025 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC19.4■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 40.3 ms