Protein–RNA interactions for Protein: O75400

PRPF40A, Pre-mRNA-processing factor 40 homolog A, humanhuman

Known RBP Predictions only

Length 957 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40AO75400 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC23.58■■□□□ 1.36
PRPF40AO75400 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC23.58■■□□□ 1.36
PRPF40AO75400 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC23.58■■□□□ 1.36
PRPF40AO75400 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.36
PRPF40AO75400 TSPY26P-201ENST00000476365 1326 ntBASIC23.58■■□□□ 1.36
PRPF40AO75400 FAM109B-201ENST00000321753 2335 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.36
PRPF40AO75400 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
PRPF40AO75400 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
PRPF40AO75400 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC23.57■■□□□ 1.36
PRPF40AO75400 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC23.57■■□□□ 1.36
PRPF40AO75400 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
PRPF40AO75400 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
PRPF40AO75400 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
PRPF40AO75400 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC23.57■■□□□ 1.36
PRPF40AO75400 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
PRPF40AO75400 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
PRPF40AO75400 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
PRPF40AO75400 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
PRPF40AO75400 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
PRPF40AO75400 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC23.57■■□□□ 1.36
PRPF40AO75400 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
PRPF40AO75400 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC23.56■■□□□ 1.36
PRPF40AO75400 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
PRPF40AO75400 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC23.56■■□□□ 1.36
PRPF40AO75400 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC23.56■■□□□ 1.36
PRPF40AO75400 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC23.56■■□□□ 1.36
PRPF40AO75400 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
PRPF40AO75400 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
PRPF40AO75400 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
PRPF40AO75400 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC23.56■■□□□ 1.36
PRPF40AO75400 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC23.56■■□□□ 1.36
PRPF40AO75400 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC23.56■■□□□ 1.36
PRPF40AO75400 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC23.56■■□□□ 1.36
PRPF40AO75400 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
PRPF40AO75400 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
PRPF40AO75400 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
PRPF40AO75400 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
PRPF40AO75400 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC23.55■■□□□ 1.36
PRPF40AO75400 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
PRPF40AO75400 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC23.55■■□□□ 1.36
PRPF40AO75400 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC23.55■■□□□ 1.36
PRPF40AO75400 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
PRPF40AO75400 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC23.55■■□□□ 1.36
PRPF40AO75400 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC23.55■■□□□ 1.36
PRPF40AO75400 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC23.55■■□□□ 1.36
PRPF40AO75400 EEF1DP3-203ENST00000566025 782 ntBASIC23.55■■□□□ 1.36
PRPF40AO75400 AC105233.4-201ENST00000642045 216 ntBASIC23.55■■□□□ 1.36
PRPF40AO75400 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC23.55■■□□□ 1.36
PRPF40AO75400 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC23.55■■□□□ 1.36
PRPF40AO75400 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
PRPF40AO75400 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC23.55■■□□□ 1.36
PRPF40AO75400 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC23.55■■□□□ 1.36
PRPF40AO75400 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
PRPF40AO75400 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
PRPF40AO75400 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC23.55■■□□□ 1.36
PRPF40AO75400 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
PRPF40AO75400 BX323043.1-201ENST00000641006 1765 ntBASIC23.55■■□□□ 1.36
PRPF40AO75400 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
PRPF40AO75400 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC23.54■■□□□ 1.36
PRPF40AO75400 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
PRPF40AO75400 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC23.54■■□□□ 1.36
PRPF40AO75400 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC23.54■■□□□ 1.36
PRPF40AO75400 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC23.54■■□□□ 1.36
PRPF40AO75400 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC23.54■■□□□ 1.36
PRPF40AO75400 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC23.54■■□□□ 1.36
PRPF40AO75400 AC053503.5-201ENST00000601508 636 ntBASIC23.54■■□□□ 1.36
PRPF40AO75400 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
PRPF40AO75400 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
PRPF40AO75400 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC23.54■■□□□ 1.36
PRPF40AO75400 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC23.54■■□□□ 1.36
PRPF40AO75400 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
PRPF40AO75400 AP000974.1-201ENST00000623909 2387 ntBASIC23.54■■□□□ 1.36
PRPF40AO75400 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC23.53■■□□□ 1.36
PRPF40AO75400 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC23.53■■□□□ 1.36
PRPF40AO75400 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC23.53■■□□□ 1.36
PRPF40AO75400 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC23.53■■□□□ 1.36
PRPF40AO75400 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC23.53■■□□□ 1.36
PRPF40AO75400 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC23.53■■□□□ 1.36
PRPF40AO75400 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
PRPF40AO75400 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC23.53■■□□□ 1.36
PRPF40AO75400 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC23.53■■□□□ 1.36
PRPF40AO75400 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC23.53■■□□□ 1.36
PRPF40AO75400 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC23.53■■□□□ 1.36
PRPF40AO75400 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC23.53■■□□□ 1.36
PRPF40AO75400 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
PRPF40AO75400 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC23.53■■□□□ 1.36
PRPF40AO75400 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC23.53■■□□□ 1.36
PRPF40AO75400 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC23.53■■□□□ 1.36
PRPF40AO75400 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC23.53■■□□□ 1.36
PRPF40AO75400 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC23.52■■□□□ 1.36
PRPF40AO75400 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
PRPF40AO75400 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
PRPF40AO75400 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
PRPF40AO75400 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
PRPF40AO75400 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
PRPF40AO75400 LHPP-203ENST00000392757 840 ntTSL 3 BASIC23.52■■□□□ 1.36
PRPF40AO75400 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC23.52■■□□□ 1.36
PRPF40AO75400 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC23.52■■□□□ 1.36
PRPF40AO75400 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC23.52■■□□□ 1.36
PRPF40AO75400 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC23.52■■□□□ 1.36
Retrieved 100 of 98,524 protein–RNA pairs in 17.5 ms