Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
TM9SF3Q9HD45 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
TM9SF3Q9HD45 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
TM9SF3Q9HD45 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC20.37■□□□□ 0.85
TM9SF3Q9HD45 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
TM9SF3Q9HD45 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
TM9SF3Q9HD45 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC20.37■□□□□ 0.85
TM9SF3Q9HD45 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
TM9SF3Q9HD45 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
TM9SF3Q9HD45 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC20.37■□□□□ 0.85
TM9SF3Q9HD45 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC20.37■□□□□ 0.85
TM9SF3Q9HD45 AC069544.1-201ENST00000609399 999 ntBASIC20.37■□□□□ 0.85
TM9SF3Q9HD45 PALM-208ENST00000592155 2272 ntTSL 4 BASIC20.37■□□□□ 0.85
TM9SF3Q9HD45 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC20.37■□□□□ 0.85
TM9SF3Q9HD45 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC20.37■□□□□ 0.85
TM9SF3Q9HD45 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
TM9SF3Q9HD45 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC20.36■□□□□ 0.85
TM9SF3Q9HD45 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
TM9SF3Q9HD45 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
TM9SF3Q9HD45 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC20.36■□□□□ 0.85
TM9SF3Q9HD45 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC20.36■□□□□ 0.85
TM9SF3Q9HD45 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC20.36■□□□□ 0.85
TM9SF3Q9HD45 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
TM9SF3Q9HD45 MIR718-201ENST00000390190 70 ntBASIC20.36■□□□□ 0.85
TM9SF3Q9HD45 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC20.36■□□□□ 0.85
TM9SF3Q9HD45 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC20.36■□□□□ 0.85
TM9SF3Q9HD45 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
TM9SF3Q9HD45 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC20.36■□□□□ 0.85
TM9SF3Q9HD45 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
TM9SF3Q9HD45 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
TM9SF3Q9HD45 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
TM9SF3Q9HD45 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
TM9SF3Q9HD45 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC20.36■□□□□ 0.85
TM9SF3Q9HD45 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC20.36■□□□□ 0.85
TM9SF3Q9HD45 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC20.36■□□□□ 0.85
TM9SF3Q9HD45 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC20.36■□□□□ 0.85
TM9SF3Q9HD45 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
TM9SF3Q9HD45 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
TM9SF3Q9HD45 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
TM9SF3Q9HD45 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
TM9SF3Q9HD45 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
TM9SF3Q9HD45 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
TM9SF3Q9HD45 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
TM9SF3Q9HD45 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC20.35■□□□□ 0.85
TM9SF3Q9HD45 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC20.35■□□□□ 0.85
TM9SF3Q9HD45 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
TM9SF3Q9HD45 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
TM9SF3Q9HD45 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
TM9SF3Q9HD45 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC20.35■□□□□ 0.85
TM9SF3Q9HD45 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
TM9SF3Q9HD45 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
TM9SF3Q9HD45 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
TM9SF3Q9HD45 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
TM9SF3Q9HD45 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
TM9SF3Q9HD45 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC20.35■□□□□ 0.85
TM9SF3Q9HD45 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC20.35■□□□□ 0.85
TM9SF3Q9HD45 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
TM9SF3Q9HD45 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
TM9SF3Q9HD45 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
TM9SF3Q9HD45 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
TM9SF3Q9HD45 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
TM9SF3Q9HD45 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
TM9SF3Q9HD45 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC20.34■□□□□ 0.85
TM9SF3Q9HD45 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
TM9SF3Q9HD45 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC20.34■□□□□ 0.85
TM9SF3Q9HD45 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
TM9SF3Q9HD45 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
TM9SF3Q9HD45 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC20.34■□□□□ 0.85
TM9SF3Q9HD45 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
TM9SF3Q9HD45 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC20.34■□□□□ 0.85
TM9SF3Q9HD45 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC20.34■□□□□ 0.85
TM9SF3Q9HD45 C2orf69P4-201ENST00000565394 541 ntBASIC20.34■□□□□ 0.85
TM9SF3Q9HD45 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC20.34■□□□□ 0.85
TM9SF3Q9HD45 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC20.34■□□□□ 0.85
TM9SF3Q9HD45 SPIB-206ENST00000596074 847 ntTSL 2 BASIC20.34■□□□□ 0.85
TM9SF3Q9HD45 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC20.34■□□□□ 0.85
TM9SF3Q9HD45 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
TM9SF3Q9HD45 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
TM9SF3Q9HD45 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC20.34■□□□□ 0.85
TM9SF3Q9HD45 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC20.34■□□□□ 0.85
TM9SF3Q9HD45 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC20.34■□□□□ 0.85
TM9SF3Q9HD45 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
TM9SF3Q9HD45 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
TM9SF3Q9HD45 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC20.34■□□□□ 0.85
TM9SF3Q9HD45 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
TM9SF3Q9HD45 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
TM9SF3Q9HD45 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC20.34■□□□□ 0.85
TM9SF3Q9HD45 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
TM9SF3Q9HD45 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
TM9SF3Q9HD45 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC20.33■□□□□ 0.85
TM9SF3Q9HD45 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC20.33■□□□□ 0.85
TM9SF3Q9HD45 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.85
TM9SF3Q9HD45 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
TM9SF3Q9HD45 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
TM9SF3Q9HD45 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
TM9SF3Q9HD45 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
TM9SF3Q9HD45 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.85
TM9SF3Q9HD45 POM121L13P-201ENST00000422362 380 ntBASIC20.33■□□□□ 0.85
TM9SF3Q9HD45 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC20.33■□□□□ 0.85
TM9SF3Q9HD45 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC20.33■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms